PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G15190.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 827aa    MW: 90544.5 Da    PI: 6.6071
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G15190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.21.6e-067192223
                     EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                     +C+ C+k+Fs++ +L+ H+++H
  ONIVA12G15190.1 71 QCQMCSKVFSTSGSLREHMMMH 92
                     7*******************99 PP
2zf-C2H215.16.6e-05275297123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ CgksF +   L  H+r+H
  ONIVA12G15190.1 275 HRCNTCGKSFGSGQALGGHMRRH 297
                      79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.1E-91034IPR007087Zinc finger, C2H2
PROSITE profilePS501579.0581039IPR007087Zinc finger, C2H2
SMARTSM003550.571032IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801132IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.577097IPR007087Zinc finger, C2H2
SMARTSM003553.3E-47092IPR015880Zinc finger, C2H2-like
PfamPF139120.0737189IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.7E-77196IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.2E-97192No hitNo description
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SuperFamilySSF576671.2E-9270297No hitNo description
PROSITE profilePS5015710.907275302IPR007087Zinc finger, C2H2
PfamPF139128.8E-11275298IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.7E-4275297IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0079275297IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280277297IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 827 aa     Download sequence    Send to blast
MAPRGKPWKH CCNKCDKSFR SGNALGGHMS CHRSVGNQPK STSSPPTVVD LHMPLLSSCD  60
DNLLLLPPET QCQMCSKVFS TSGSLREHMM MHGGEKVVVK AEEEAAGLIE ALGIADSMQD  120
VMVFSSVKRK RSFRSKRQTP ALSLEEIEAA DALLLLSGCF DKTSAYEDCY LGDIEDSSLR  180
SIVLTEVNMN AVDRCSVRSV GSKEPINDNN SGYKDCYGQS DKENCLIIPK EEMDPNDFDH  240
ELVRDAALRK PRTDNSDEEM KFGDLPAAAM KDNSHRCNTC GKSFGSGQAL GGHMRRHYVR  300
KCNRQRGVAD RAGSVLMKVQ KLKLRLDPIL FDVTLPALTD GDCCISVGVK PEPQLCRPIM  360
TRVLILRLTT NPLFFPDASL SPLLSPLPQP KPPQLAAALA RPRRMNLGRE MASDVPQDDV  420
QCHFCGTYLR PRSFRKHQQR CKYNPDALTR ENLPASSIPA SATRAMHSEM ASDGPQENCQ  480
CSFCHKDFEG RSSCAKHELQ CKNNPDVHSQ TEPSGNAQGG IGSLDVHVPR RKRTARNQPL  540
PEQHLKKPAS DYAQGGTSDA PETPPKPTTS EVKVDSAVNA PDITIPDNKD PSVMQKQKKK  600
LDLNLQPHSD SSDQEEQADN FSSINDLSTI GTNSDKKKNT ITGVADTNIP DHKDPSRMQM  660
QIKLDLNLPP HDDSFSSMDD LNALVPADTN SDKEKKTDNG GAPADANSDK EKRTDNGSVP  720
TGTNSIKEKK TDNGGVDINI PDHKDPSARQ VQKKLSLNLP PCNDSSSSMD DLKTLAPTDT  780
NSDKETNTSN GGVDTNIPDH SDPSAMQTKN KLDFNLPPRN DSSDSLV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL9287740.0AL928774.3 Oryza sativa chromosome 12, . BAC OSJNBa0078O17 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0JBH90.0A0A0E0JBH9_ORYNI; Uncharacterized protein
STRINGONIVA12G15190.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91122229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.13e-07C2H2 family protein