 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
ONIVA12G15590.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
C2H2 |
| Protein Properties |
Length: 127aa MW: 12573.1 Da PI: 6.2337 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ONIVA12G15590.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 12.2 | 0.00054 | 35 | 54 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20
++C+ Cgk F++ L H
ONIVA12G15590.1 35 HECNVCGKAFPTGQALGGHK 54
79*********988887665 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 127 aa
Download sequence Send
to blast |
MVDDDEVVVE TKPAAIATPS SSASGVSGGG GGRAHECNVC GKAFPTGQAL GGHKRCHYDG 60
TIGSAAGAGA SKPAAKTTVA VAASRGFDLN LPALPDVAAA ADQRCAAEDD EVLSPLAFKK 120
PRLMIPA
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK288963 | 0.0 | AK288963.1 Oryza sativa Japonica Group cDNA, clone: J090084H09, full insert sequence. |
| GenBank | AL772427 | 0.0 | AL772427.4 Oryza sativa chromosome 12, . BAC OJ1260_B01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
| GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
| GenBank | AY219847 | 0.0 | AY219847.1 Oryza sativa Japonica Group zinc finger protein ZFP252 mRNA, complete cds. |
| GenBank | CP012620 | 0.0 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
| GenBank | CT841608 | 0.0 | CT841608.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C105H24, full insert sequence. |
