PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G16900.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 323aa    MW: 34271 Da    PI: 4.2702
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G16900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.54.5e-15157207255
              AP2   2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      g+ GV+++   grW AeIrd    + ++  rf++g+f+ta +Aa a++a  ++l+g
  ONIVA12G16900.1 157 GFLGVHQRT-YGRWSAEIRD----NvIKgSRFWIGTFDTALDAALAYDAVSRRLYG 207
                      788***999.8*********....66345********************9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.3E-18157221IPR001471AP2/ERF domain
PROSITE profilePS5103218.004157215IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-17157216IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-22158216IPR001471AP2/ERF domain
PRINTSPR003673.6E-5158169IPR001471AP2/ERF domain
PfamPF008475.1E-8160207IPR001471AP2/ERF domain
PRINTSPR003673.6E-5181197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MCGGGPDNHR AIAVAAAAEL PPPSVVAVEM APPHGHLPGK EVYNEEEEEE DDDDDDEYDG  60
REFEEEFLRF SMMVDEEDDD DDDDEVEIIA VVPPPRWPLV GARGTTSAVE SVTNLQARTS  120
PLPNPVVPQT GTKASKRGDS GAKAKPAAAK KRRSKHGFLG VHQRTYGRWS AEIRDNVIKG  180
SRFWIGTFDT ALDAALAYDA VSRRLYGLNA KTNFPAAAGE DDLPPPPPPA KPCSSTKRPK  240
KCNTSGDLGA AAAPPQAVDT PAAAAAGVEL TSLLCSVAAQ AQEVSDGWEF IQELLLLGGG  300
VSPLDYLNGQ ELAGAAVGDL WSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-12153215263ATERF1
3gcc_A1e-12153215263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149154KKRRSK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2875440.0AK287544.1 Oryza sativa Japonica Group cDNA, clone: J065016L10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619473.11e-165ethylene-responsive transcription factor ERF023
TrEMBLA0A0E0JC410.0A0A0E0JC41_ORYNI; Uncharacterized protein
STRINGONIVA12G16900.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15980813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.11e-09ERF family protein