PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G17590.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YA
Protein Properties Length: 197aa    MW: 21889.5 Da    PI: 7.1773
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G17590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA54.15.2e-17108148142
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheS 42 
                      +ep+YVNaKQy++Il+RRq+Rak+e+ekkl  k+rk  l  S
  ONIVA12G17590.1 108 EEPVYVNAKQYNAILRRRQSRAKAESEKKL-VKGRKFELVRS 148
                      69****************************.9***9888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.0E-9106163IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115216.796107142IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.8E-12109145IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860112132IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MTSVVHDVSG NHGADERQKQ QRQGEPEDQQ EASVTSTDSH TMVATPSTDY ATPYAHHDMA  60
HAMGQIAYAN IDPYYGSLYA AYGGQPMMHP PLVGMHPAGL PLPTDAIEEP VYVNAKQYNA  120
ILRRRQSRAK AESEKKLVKG RKFELVRSTS EQQLASSSRL NSPIYISHFH TKINLLYYFD  180
SSALCSHISM SHGINMP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880280.0AB288028.1 Oryza sativa Japonica Group OsHAP2B mRNA for HAP2 subunit of HAP complex, complete cds.
GenBankAK0651630.0AK065163.1 Oryza sativa Japonica Group cDNA clone:J013002C07, full insert sequence.
GenBankHQ8396730.0HQ839673.1 Oryza sativa Japonica Group NF-Y transcription factor 22 (NF-Y22) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618406.11e-128nuclear transcription factor Y subunit A-7 isoform X3
RefseqXP_015618408.11e-128nuclear transcription factor Y subunit A-7 isoform X5
TrEMBLA0A0E0JCD31e-145A0A0E0JCD3_ORYNI; Uncharacterized protein
STRINGORUFI12G20840.11e-101(Oryza rufipogon)
STRINGOS12T0613000-011e-101(Oryza sativa)
STRINGONIVA12G17590.21e-101(Oryza nivara)
STRINGORGLA12G0159000.11e-101(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.24e-27nuclear factor Y, subunit A7