PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G00360.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 370aa    MW: 39847 Da    PI: 7.0705
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G00360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.56.5e-052582961255
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  OPUNC01G00360.1 258 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 296
                      7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.477246295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-11256308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.09E-5256300No hitNo description
Gene3DG3DSA:4.10.280.108.0E-9260303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MASSSSSSSL CDNNLLQDDL PWPSMPFAPA PHTFGLNHQW SQPPMLSSST DELSSYELES  60
LQSVQSQLLA AAPPTLSPHL QAHQLSTVVM MQELGFQWSS CAAPTDHHNI ASSMNNNVMM  120
NEEELRRRPD QSLISNPRSC GATTPTTDMV LPPPHLAASL DGVVLPSINV SRLQKPTGAG  180
DEPPQICCKR QAAARDEHEP CPYGPPAHLI QGPSHSHTLQ MERNTDAAAQ GSSALPPSSK  240
KPRLESSAVA MVPSFKVRKE KLGDRIAALQ QLVSPFGKTD TASVLMEAIG YIKFLQDQVE  300
TLSGPYLRSS KNSKKLTCRA AQPQRGASNG GEAAAKLDLR SRGLCLVPLS CTSYVTNENG  360
VWPPPNFRGN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1194930.0AK119493.1 Oryza sativa Japonica Group cDNA clone:001-134-D09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627200.10.0uncharacterized protein LOC4326301
TrEMBLA0A0E0JD460.0A0A0E0JD46_ORYPU; Uncharacterized protein
STRINGOPUNC01G00360.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72403242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.12e-42bHLH family protein