PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G00520.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 204aa    MW: 22526.6 Da    PI: 10.1924
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G00520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.7e-092980554
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C....TTS-STCHHHHHHHHHHHHHH CS
              HLH  5 hnerErrRRdriNsafeeLrellPk.as.kapskKlsKaeiLekAveYIksL 54
                      +e+ErrRR++++    +L +l+Pk  + k ++   s  + L +A  YI++L
  OPUNC01G00520.1 29 RKEMERRRRQDMKGLCIKLASLVPKeHYsKSKGATRSQLSSLDEAAVYIRKL 80
                     579**********************5557777777***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.022480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-112891IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-103096IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-63086IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-63080IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MEEKADGGGR RRRSRATSSA AAAAAAAERK EMERRRRQDM KGLCIKLASL VPKEHYSKSK  60
GATRSQLSSL DEAAVYIRKL KERVDELQHR RRMHMTVAAA GQSTSGGGGS EEDEMTMRRG  120
DVVVEVQEGS SSLDVVLICS AARPVKFHDV ITVLEEEGAD IINANFSLAA HKIYYTIYSR  180
AFSSRIGIEA SRISERLRAL VIRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0028451e-59AP002845.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0482C06.
GenBankAP0149571e-59AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126171e-59CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647782.11e-72transcription factor bHLH167 isoform X2
TrEMBLA0A0E0JD651e-143A0A0E0JD65_ORYPU; Uncharacterized protein
STRINGOPUNC01G00520.11e-144(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.15e-13bHLH family protein