PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G00530.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 203aa    MW: 22334.3 Da    PI: 10.0492
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G00530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.7e-093294455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC..............TTS-STCHHHHHHHHHHHHHHH CS
              HLH  4 ahnerErrRRdriNsafeeLrellPkas...........kapskKlsKaeiLekAveYIksLq 55
                       + +E++RR +++    +L +l+P+a+           + +++ ++  + Le+A  YIk+L+
  OPUNC01G00530.1 32 ERKDVEKNRRLHMKGLCLKLSSLIPSATarrhhhyssssSSTKETVTQLDHLEQAAAYIKQLK 94
                     56899*********************999********75555555****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.8642893IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-930107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-1130108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-63293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00343499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MKSRKNNAST RAGSSSSGGG GNCYSSSSSK MERKDVEKNR RLHMKGLCLK LSSLIPSATA  60
RRHHHYSSSS SSTKETVTQL DHLEQAAAYI KQLKGRIEEL KKRKQQAAAS SNGGGMPVVE  120
VRCQDGTLDV VVVSEERERE KAVRLHEVIG VLEEEGAEVV NASFSVVGDK IFYTLHSQAL  180
CSRIGLDASR VSHRLRTLLL QYY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1094320.0AK109432.2 Oryza sativa Japonica Group cDNA clone:006-308-A12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622948.12e-99transcription factor bHLH168
TrEMBLA0A0E0JD661e-145A0A0E0JD66_ORYPU; Uncharacterized protein
STRINGOPUNC01G00530.11e-146(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.15e-20bHLH family protein