PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G01540.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 195aa    MW: 21809.3 Da    PI: 7.2528
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G01540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-174487146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     r ++++eEdell++++++lG++ W++Ia +++ gRt+k++ ++w++
  OPUNC01G01540.1 44 RRSFSEEEDELLLKLHALLGNR-WSLIAGRLP-GRTDKEVMNHWNS 87
                     6789******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.58E-153893IPR009057Homeodomain-like
PROSITE profilePS5129423.9463993IPR017930Myb domain
SMARTSM007172.7E-164391IPR001005SANT/Myb domain
PfamPF002496.4E-164487IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-204689IPR009057Homeodomain-like
CDDcd001672.32E-66489No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080110Biological Processsporopollenin biosynthetic process
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
GO:0050662Molecular Functioncoenzyme binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MCNEVSTRAQ LCRAADVSSQ PPPRLTSEHL PAGDPPPLSR SRKRRSFSEE EDELLLKLHA  60
LLGNRWSLIA GRLPGRTDKE VMNHWNSKLI KRMDSTTDHP PSLHDDEHRR RRRRLRSEAH  120
DERDVARHPG HNSSSSSKDV NGGECTVADD ASSCNQDDNR AVAELNLELT LSTPCIYLLL  180
GEKCKDGSMS SQGLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-13439558110B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14045SRKRRS
2108115RRRRRRLR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0028601e-135AP002860.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0409B08.
GenBankAP0149571e-135AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-135CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0JDK71e-139A0A0E0JDK7_ORYPU; Uncharacterized protein
STRINGOS01T0127450-003e-78(Oryza sativa)
STRINGONIVA01G01950.18e-76(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.12e-12MYB family protein