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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
OPUNC01G04710.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family |
G2-like |
| Protein Properties |
Length: 125aa MW: 14286.8 Da PI: 10.0469 |
| Description |
G2-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC01G04710.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | G2-like | 21.2 | 6.6e-07 | 1 | 19 | 33 | 51 |
G2-like 33 lelmkvkgLtlehvkSHLQ 51
+++m+v gLt +++kSHLQ
OPUNC01G04710.1 1 MQAMGVTGLTTHNIKSHLQ 19
799**************** PP
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1qn7_B | 3e-52 | 20 | 106 | 80 | 166 | TRANSCRIPTION INITIATION FACTOR TFIID-1 |
| 1qn8_A | 3e-52 | 20 | 106 | 80 | 166 | TRANSCRIPTION INITIATION FACTOR TFIID-1 |
| 1qn8_B | 3e-52 | 20 | 106 | 80 | 166 | TRANSCRIPTION INITIATION FACTOR TFIID-1 |
| 1qn9_A | 3e-52 | 20 | 106 | 80 | 166 | TRANSCRIPTION INITIATION FACTOR TFIID-1 |
| 1qn9_B | 3e-52 | 20 | 106 | 80 | 166 | TRANSCRIPTION INITIATION FACTOR TFIID-1 |
| 1qna_A | 3e-52 | 20 | 106 | 80 | 166 | TRANSCRIPTION INITIATION FACTOR TFIID-1 |
| 1qna_B | 3e-52 | 20 | 106 | 80 | 166 | TRANSCRIPTION INITIATION FACTOR TFIID-1 |
| 1qnb_A | 3e-52 | 20 | 106 | 80 | 166 | TRANSCRIPTION INITIATION FACTOR TFIID-1 |
| 1qnb_B | 3e-52 | 20 | 106 | 80 | 166 | TRANSCRIPTION INITIATION FACTOR TFIID-1 |
| 1qnc_A | 3e-52 | 20 | 106 | 80 | 166 | TRANSCRIPTION INITIATION FACTOR TFIID-1 |
| 1qnc_B | 3e-52 | 20 | 106 | 80 | 166 | TRANSCRIPTION INITIATION FACTOR TFIID-1 |
| 1qne_A | 3e-52 | 20 | 106 | 80 | 166 | TRANSCRIPTION INITIATION FACTOR TFIID-1 |
| 1qne_B | 3e-52 | 20 | 106 | 80 | 166 | TRANSCRIPTION INITIATION FACTOR TFIID-1 |
| 1vok_A | 3e-52 | 20 | 106 | 80 | 166 | TATA-BOX-BINDING PROTEIN |
| 1vok_B | 3e-52 | 20 | 106 | 80 | 166 | TATA-BOX-BINDING PROTEIN |
| 1vol_B | 3e-52 | 20 | 106 | 80 | 166 | PROTEIN (TATA BINDING PROTEIN (TBP)) |
| 1vtl_E | 2e-52 | 20 | 106 | 68 | 154 | TATA BINDING PROTEIN (TBP) |
| 1vtl_F | 2e-52 | 20 | 106 | 68 | 154 | TATA BINDING PROTEIN (TBP) |
| 1vto_A | 2e-52 | 20 | 106 | 70 | 156 | TATA BINDING PROTEIN |
| 1vto_B | 2e-52 | 20 | 106 | 70 | 156 | TATA BINDING PROTEIN |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | General transcription factor that functions at the core of the DNA-binding multiprotein factor TFIID. Binding of TFIID to the TATA box is the initial transcriptional step of the pre-initiation complex (PIC), playing a role in the activation of eukaryotic genes transcribed by RNA polymerase II. |
| UniProt | General transcription factor that functions at the core of the DNA-binding multiprotein factor TFIID. Binding of TFIID to the TATA box is the initial transcriptional step of the pre-initiation complex (PIC), playing a role in the activation of eukaryotic genes transcribed by RNA polymerase II. |
| UniProt | General transcription factor that functions at the core of the DNA-binding multiprotein factor TFIID. Binding of TFIID to the TATA box is the initial transcriptional step of the pre-initiation complex (PIC), playing a role in the activation of eukaryotic genes transcribed by RNA polymerase II. |
| UniProt | General transcription factor that functions at the core of the DNA-binding multiprotein factor TFIID. Binding of TFIID to the TATA box is the initial transcriptional step of the pre-initiation complex (PIC), playing a role in the activation of eukaryotic genes transcribed by RNA polymerase II. |
| UniProt | General transcription factor that functions at the core of the DNA-binding multiprotein factor TFIID. Binding of TFIID to the TATA box is the initial transcriptional step of the pre-initiation complex (PIC), playing a role in the activation of eukaryotic genes transcribed by RNA polymerase II (By similarity). {ECO:0000250, ECO:0000269|PubMed:11971135}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK061103 | 1e-147 | AK061103.1 Oryza sativa Japonica Group cDNA clone:006-207-B06, full insert sequence. |
| GenBank | CT830226 | 1e-147 | CT830226.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA103A15, full insert sequence. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Haass MM,Feix G
Two different cDNAs encoding TFIID proteins of maize.
FEBS Lett., 1992. 301(3): p. 294-8
[PMID:1577169] - Vogel JM,Roth B,Cigan M,Freeling M
Expression of the two maize TATA binding protein genes and function of the encoded TBP proteins by complementation in yeast.
Plant Cell, 1993. 5(11): p. 1627-38
[PMID:8312743] - Goddemeier ML,Feix G
Genomic structure of the maize TATA-box binding protein 1 (TBP-1): conserved exon/intron structure in eukaryotic TBP genes.
Gene, 1996. 174(1): p. 111-4
[PMID:8863736]
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