PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G05180.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 251aa    MW: 26697 Da    PI: 10.2798
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G05180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.81.4e-102042323159
                      T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  31 gCpvkkkversaedpkvveitYegeHnhe 59 
                      +C+vkk+ver aedp++v++tYeg+H h+
  OPUNC01G05180.1 204 NCRVKKRVERLAEDPRMVITTYEGRHVHS 232
                      8***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-8175203IPR003657WRKY domain
SuperFamilySSF1182901.02E-15182233IPR003657WRKY domain
PROSITE profilePS5081115.445185234IPR003657WRKY domain
SMARTSM007745.2E-16190233IPR003657WRKY domain
PfamPF031062.5E-6203231IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-8204232IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MFPSPGRAVM ALGHHGAARQ QATAMAAATT NSAAAAPATV ALAFQQPSPT PPPHHHHHHG  60
ILGYSPLVLD HHPTTTTSSH APSPPTLHHP GLHAAAAAHP PRSSPPHPWS CEEGDRGRQM  120
GKGAAAAMQG MGINDDGNNA GAVSSAAAQR HLGVGAVRMK KAGGGGGGKA RRKVREPRFC  180
FKTMSDVDVL DDGYKWRKYG QKDNCRVKKR VERLAEDPRM VITTYEGRHV HSPSRDDDDA  240
ARASAEMTFI W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-13181231874Probable WRKY transcription factor 4
2lex_A2e-13181231874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1087551e-125AK108755.1 Oryza sativa Japonica Group cDNA clone:002-150-F11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818604.18e-73probable WRKY transcription factor 13
SwissprotQ9SVB71e-37WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A0E0JEY00.0A0A0E0JEY0_ORYPU; Uncharacterized protein
STRINGOPUNC01G05180.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.13e-29WRKY DNA-binding protein 13