PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G05240.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 284aa    MW: 29893.8 Da    PI: 4.066
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G05240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC431e-1315924218100
            NF-YC  18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr.tdifdflvdivprde 100
                      + +lPl r+k+i+++d d+k++++ea  l++ a elf+  l+  +   a    rr+++   + aa  +   + dfl+d  p+ e
  OPUNC01G05240.1 159 RPALPLGRVKRIIRVDRDIKKVTSEAALLITAATELFLGSLAAGAHRAASRRGRRAVRAVHVRAAAREhRPTADFLLDCFPTAE 242
                      5589**********************************************************98876515699*****999765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.68E-14161242IPR009072Histone-fold
PfamPF008081.7E-12162223IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.106.9E-16162239IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MAAAVAVADE VTEAMEQVEG ERVEADAVAD EAAEVMEEAE GEREEADAVA GDAVEVMEEV  60
AEGEREKADG VAGKATEAME EVIEGERKEA DAVADEDIEA MEEVVEEEQE EAHAVADEAA  120
EAMEPEGERE EADAVADEAA EAMEQVEGER EDGDAVALRP ALPLGRVKRI IRVDRDIKKV  180
TSEAALLITA ATELFLGSLA AGAHRAASRR GRRAVRAVHV RAAAREHRPT ADFLLDCFPT  240
AEEAAPARAA TAGPRGGGGG GGGGEAKPLP RGTRRIDAFF QKTT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0024840.0AP002484.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0489A01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879187.12e-76tropomyosin
TrEMBLA0A0E0JEY60.0A0A0E0JEY6_ORYPU; Uncharacterized protein
STRINGOPUNC01G05240.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133422628