PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC01G05730.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 395aa MW: 41940.1 Da PI: 7.1031

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC01G05730.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.5	4.9e-08	129	149	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G Ck+Gd C +aHg OPUNC01G05730.1 129 ACPDFRK-GGCKRGDACEYAHG 149 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	3.4E-5	124	150	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.103	125	151	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.5E-5	128	151	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.7E-6	129	149	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.258	159	183	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	12	159	182	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0010150	Biological Process	leaf senescence
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MMMMGEGVSS VPPWSHLPVS GVDVLGGGGG GGGGGGVGGG DEMTPYLIAA LREYLPANDV 60 GVGVDDEEEA AAMAAAVDAY ACDEFRMYEF KVRRCARGRS HDWTECPFAH PGEKARRRDP 120 RKYHYSGTAC PDFRKGGCKR GDACEYAHGV FECWLHPARY RTQPCKDGTA CRRRVCFFAH 180 TPDQLRVLPA QQSSPRSVAS SPLAESYDGS PLRRQAFESY LTKTIISSSP TSTLMSPPKS 240 PPSESPPLSP DGAAAIRRGS WPGVGSPVND VLASFRQLRL SKVKSSPSGG WSYPASSAVY 300 GSPKAATGLY SLPTTPLAST TTVTTAASFM PNLEPLDLGL IGDEEPVQRV ESGRALREKV 360 FERLSRDGAI SGDATAAAMN AGVGLDVAWV SDLIN

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MMMMGEGVSS VPPWSHLPVS GVDVLGGGGG GGGGGGVGGG DEMTPYLIAA LREYLPANDV  60
GVGVDDEEEA AAMAAAVDAY ACDEFRMYEF KVRRCARGRS HDWTECPFAH PGEKARRRDP  120
RKYHYSGTAC PDFRKGGCKR GDACEYAHGV FECWLHPARY RTQPCKDGTA CRRRVCFFAH  180
TPDQLRVLPA QQSSPRSVAS SPLAESYDGS PLRRQAFESY LTKTIISSSP TSTLMSPPKS  240
PPSESPPLSP DGAAAIRRGS WPGVGSPVND VLASFRQLRL SKVKSSPSGG WSYPASSAVY  300
GSPKAATGLY SLPTTPLAST TTVTTAASFM PNLEPLDLGL IGDEEPVQRV ESGRALREKV  360
FERLSRDGAI SGDATAAAMN AGVGLDVAWV SDLIN

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269\|PubMed:16778011}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK100770	0.0	AK100770.1 Oryza sativa Japonica Group cDNA clone:J023119N23, full insert sequence.
GenBank	AP002746	0.0	AP002746.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0671B11.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025879384.1	0.0	zinc finger CCCH domain-containing protein 2
Swissprot	Q9FU27	0.0	C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBL	A0A0E0JF39	0.0	A0A0E0JF39_ORYPU; Uncharacterized protein
STRING	OPUNC01G05730.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1578	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	2e-82	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Mebel AM,Kislov VV,Hayashi M Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories. J Chem Phys, 2007. 126(20): p. 204310 [PMID:17552765] Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T Anti-angiogenic function of tocotrienol. Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6 [PMID:18296349]