PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC01G05880.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 494aa MW: 52234.5 Da PI: 8.7188

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC01G05880.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.4	2.9e-06	81	103	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cgk F r nL+ H r H OPUNC01G05880.1 81 YVCEICGKGFQRDQNLQLHRRGH 103 9********************88 PP
2	zf-C2H2	11	0.0013	158	180	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +++ OPUNC01G05880.1 158 WKCDKCSKRYAVHSDWKAHAKVC 180 58*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.0E-8	80	103	No hit	No description
SMART	SM00355	0.0069	81	103	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.4E-6	81	103	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.801	81	103	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	83	103	IPR007087	Zinc finger, C2H2
SMART	SM00355	44	123	153	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	4.8E-4	146	178	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.0E-8	153	178	No hit	No description
SMART	SM00355	150	158	178	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MMLKDLAEIQ QQQQQLLAAA AAAAAEENMS NLTSASGDQA SVSSHPAPPP AKKKRSLPGN 60 PDPEAEVIAL SPRTLMATNR YVCEICGKGF QRDQNLQLHR RGHNLPWKLK QRNPKEVVRK 120 KVYVCPEAGC VHHDPARALG DLTGIKKHFS RKHGEKKWKC DKCSKRYAVH SDWKAHAKVC 180 GTREYRCDCG TLFSRRDSFI THRAFCDALA EESARAMTVT AAAAAVAVAG QQQHAGGMLF 240 SQGGGGLQLP AVIDHNLMQE LCLKREQQQF APSWLTAQQQ HHQQLEVMAS AGNPSAMYGS 300 ARLEQEFIGS STPESGGAQA GLSFGFSLTS SAPPHAASSA HMSATALLQK AAQMGATLSR 360 PSSQAHMAAA AASTHNSSSV AAATNAPPPA SNMTSTCVGA GAGGYGLAFE ASHFIGTDES 420 RARSDRDTGN GRGGGGVAGA GNDGLTRDFL GLRAFSHGDI MSMAGFDPCM STTSASSAAA 480 YEQGHHHSNK PWHS

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MMLKDLAEIQ QQQQQLLAAA AAAAAEENMS NLTSASGDQA SVSSHPAPPP AKKKRSLPGN  60
PDPEAEVIAL SPRTLMATNR YVCEICGKGF QRDQNLQLHR RGHNLPWKLK QRNPKEVVRK  120
KVYVCPEAGC VHHDPARALG DLTGIKKHFS RKHGEKKWKC DKCSKRYAVH SDWKAHAKVC  180
GTREYRCDCG TLFSRRDSFI THRAFCDALA EESARAMTVT AAAAAVAVAG QQQHAGGMLF  240
SQGGGGLQLP AVIDHNLMQE LCLKREQQQF APSWLTAQQQ HHQQLEVMAS AGNPSAMYGS  300
ARLEQEFIGS STPESGGAQA GLSFGFSLTS SAPPHAASSA HMSATALLQK AAQMGATLSR  360
PSSQAHMAAA AASTHNSSSV AAATNAPPPA SNMTSTCVGA GAGGYGLAFE ASHFIGTDES  420
RARSDRDTGN GRGGGGVAGA GNDGLTRDFL GLRAFSHGDI MSMAGFDPCM STTSASSAAA  480
YEQGHHHSNK PWHS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-34	154	220	3	69	Zinc finger protein JACKDAW
5b3h_F	2e-34	154	220	3	69	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	120	KLKQRNPKEVVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK105663	0.0	AK105663.1 Oryza sativa Japonica Group cDNA clone:001-200-H06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015622491.1	0.0	protein indeterminate-domain 7
Swissprot	Q8H1F5	1e-123	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A0E0JF58	0.0	A0A0E0JF58_ORYPU; Uncharacterized protein
STRING	OPUNC01G05880.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-109	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]