PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G05940.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 878aa    MW: 92762.9 Da    PI: 8.0198
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G05940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.43.9e-11217263455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h + Er+RR+++N +f  L+ +lP+       K +K +iL +A eY+ksL+
  OPUNC01G05940.1 217 QHTISERKRREKLNGSFVALKAVLPPG-----SKKDKTSILIRAREYVKSLE 263
                      599**********************95.....4999**************96 PP
2HLH36.86.9e-12514559555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h + Er+RR+++N++f  L+++lP+       K +K +iL +A eY+ksL+
  OPUNC01G05940.1 514 HMISERKRREKLNDSFLALKTVLPPG-----SKKDKTSILIRAREYVKSLE 559
                      7899********************95.....4999**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.66E-13211267No hitNo description
SuperFamilySSF474591.96E-15213282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.183213262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-8217263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-15217281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-12219268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146865.69E-4254282No hitNo description
PROSITE profilePS5088814.392509558IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.14E-15511578IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.63E-13511563No hitNo description
Gene3DG3DSA:4.10.280.102.3E-12512557IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-9514559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-12515564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146860.00152550578No hitNo description
Gene3DG3DSA:1.20.5.1707.9E-4558577No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 878 aa     Download sequence    Send to blast
MDSSGWIVHG YTNATATGAG NHGFTCGNAA SMHLSMDDDD QSAVYGAATM DDLLMPSPLT  60
HHAAAAAGSF PSSSSSSASF RSASVSYSPD TSAAAAAAPF LAAPAAAATG FQYPEVSSQA  120
TLPPPLVPYE PQHGHYTAGL LSAAELPATG GAFRRYSRHL GPRRAPKPGS CGQRMFKTAM  180
SVLAKMHRHR QYYYQQAAAA SASGVEAPPP SGNNQLQHTI SERKRREKLN GSFVALKAVL  240
PPGSKKDKTS ILIRAREYVK SLESKLSELE EKNRELEARL ASRPAVVAKN DEGETAAAAV  300
EAGDEAKGDG VLEIKALDNI NMHMSMDDES AVYDGASMVD DLLMASSSAH HAGAGSFVQY  360
SSSSSSASFR SASVSCSPES SAAATHILGA PSSAAAGFHY YPEVSSQAPL PLPLPPYEPQ  420
HGQYTVLSPA APELPVTTPA TGGAFRRYAR HLRPRRLPKP GARGQRMFKT AMSVLAKMHV  480
AATYSRQYYY QQAAAASASG VEAAAPPSGN QLQHMISERK RREKLNDSFL ALKTVLPPGS  540
KKDKTSILIR AREYVKSLES KLSELEEKNR KLEARLASRP AVVAAKNDKG ETAAEAGGET  600
KREDIVEIEV TTSGTGAADA AAATGGEETC TLNVDLRGGG GGRGMSATDV VLRTLQCLRE  660
QIGDGASLVA MSTSAGSGGR PPRANLTLQL KDHDVKMSYW YEGILHYCTN PPATYGRTLK  720
PCVTAGMFSR MKIPLDFIRN FFPSHANLLI GDDVEQESLV GNEGGGTEWR HRAAAPPLYD  780
AHLPPRSRQA PKEAERGVIG RRKEDTMVDW PVLVAMVQPL ASSLWDDSSR TATVSSCPAR  840
GVASSTSSAA TTSLSLNATV EVGSGEGKEG CVESPNGD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1517522ERKRRE
2518523RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1029640.0AK102964.1 Oryza sativa Japonica Group cDNA clone:J033115I17, full insert sequence.
GenBankHQ8588700.0HQ858870.1 Oryza sativa Japonica Group isolate UT1679 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626911.11e-158uncharacterized protein LOC4327325
TrEMBLA0A0E0JF660.0A0A0E0JF66_ORYPU; Uncharacterized protein
STRINGOPUNC01G05940.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-17bHLH family protein