PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G05940.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 582aa    MW: 61204.4 Da    PI: 7.6302
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G05940.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.3e-11217263455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h + Er+RR+++N +f  L+ +lP+       K +K +iL +A eY+ksL+
  OPUNC01G05940.2 217 QHTISERKRREKLNGSFVALKAVLPPG-----SKKDKTSILIRAREYVKSLE 263
                      599**********************95.....4999**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.69E-13211267No hitNo description
SuperFamilySSF474591.57E-15211281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.183213262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-12216261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-9217263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-12219268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146864.81E-4254282No hitNo description
Gene3DG3DSA:1.20.5.1704.9E-4262281No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MDSSGWIVHG YTNATATGAG NHGFTCGNAA SMHLSMDDDD QSAVYGAATM DDLLMPSPLT  60
HHAAAAAGSF PSSSSSSASF RSASVSYSPD TSAAAAAAPF LAAPAAAATG FQYPEVSSQA  120
TLPPPLVPYE PQHGHYTAGL LSAAELPATG GAFRRYSRHL GPRRAPKPGS CGQRMFKTAM  180
SVLAKMHRHR QYYYQQAAAA SASGVEAPPP SGNNQLQHTI SERKRREKLN GSFVALKAVL  240
PPGSKKDKTS ILIRAREYVK SLESKLSELE EKNRKLEARL ASRPAVVAAK NDKGETAAEA  300
GGETKREDIV EIEVTTSGTG AADAAAATGG EETCTLNVDL RGGGGGRGMS ATDVVLRTLQ  360
CLREQIGDGA SLVAMSTSAG SGGRPPRANL TLQLKDHDVK MSYWYEGILH YCTNPPATYG  420
RTLKPCVTAG MFSRMKIPLD FIRNFFPSHA NLLIGDDVEQ ESLVGNEGGG TEWRHRAAAP  480
PLYDAHLPPR SRQAPKEAER GVIGRRKEDT MVDWPVLVAM VQPLASSLWD DSSRTATVSS  540
CPARGVASST SSAATTSLSL NATVEVGSGE GKEGCVESPN GD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221226ERKRRE
2222227RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1029640.0AK102964.1 Oryza sativa Japonica Group cDNA clone:J033115I17, full insert sequence.
GenBankHQ8588700.0HQ858870.1 Oryza sativa Japonica Group isolate UT1679 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626911.11e-131uncharacterized protein LOC4327325
TrEMBLA0A0E0JF670.0A0A0E0JF67_ORYPU; Uncharacterized protein
STRINGOPUNC01G05940.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.14e-17bHLH family protein