PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G06210.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 247aa    MW: 26241.3 Da    PI: 6.0891
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G06210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.6e-1758106355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr +  +g+Wv+eIr+p++   + r++lg+f  +e+Aa+a++ a+++++g
  OPUNC01G06210.1  58 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPCPEMAARAHDVAALSIKG 106
                      9****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.4E-3457120IPR001471AP2/ERF domain
PROSITE profilePS5103222.857114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3058115IPR001471AP2/ERF domain
CDDcd000189.76E-3058116No hitNo description
SuperFamilySSF541713.07E-2058115IPR016177DNA-binding domain
PRINTSPR003673.2E-95869IPR001471AP2/ERF domain
PfamPF008471.1E-1158106IPR001471AP2/ERF domain
PRINTSPR003673.2E-98096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MAASEQSSES SSTASYSSCS PASTSSCGGG GGAKKQEVGK RKREDGGGGV AGEQAVAYRG  60
VRMRAWGKWV SEIREPRKKS RIWLGTFPCP EMAARAHDVA ALSIKGARAV LNFPDLAPAL  120
PRPASLAPRD VQAAAALAAV MHHHKHPVPT SSTSTSTSTT TTISSPLVPP PADEHPAARD  180
EPQHPEPSRE NEQTPPPAAQ MAVAELVFDE LAPLWVEDVV EFGPSDHCWT AYDALDPIGF  240
QPLLWEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1744114272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1088731e-131AK108873.1 Oryza sativa Japonica Group cDNA clone:002-152-C11, full insert sequence.
GenBankAP0031971e-131AP003197.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1015E06.
GenBankAP0149571e-131AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAY3393741e-131AY339374.1 Oryza sativa (japonica cultivar-group) Ap21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644400.15e-97ethylene-responsive transcription factor TINY
TrEMBLA0A0E0JFA01e-179A0A0E0JFA0_ORYPU; Uncharacterized protein
STRINGOPUNC01G06210.11e-180(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.16e-31ERF family protein