PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC01G06730.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 193aa MW: 21966.7 Da PI: 9.6705

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC01G06730.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.2	5.2e-15	33	80	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 +WT+eEd l ++ ++ G ++W+++a +m+ +R++kqc++rw+++l OPUNC01G06730.1 33 AWTPEEDASLERLARENGFRHWRRVAMEMQprGRRSPKQCRDRWRDHL 80 7********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.141	26	84	IPR017930	Myb domain
SMART	SM00717	6.8E-12	30	82	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.62E-16	33	102	IPR009057	Homeodomain-like
CDD	cd00167	2.60E-12	33	80	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.9E-16	33	88	IPR009057	Homeodomain-like
Pfam	PF00249	2.4E-14	33	80	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.586	81	132	IPR017877	Myb-like domain
SMART	SM00717	2.2	85	134	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.09E-6	87	142	IPR009057	Homeodomain-like
CDD	cd00167	0.00196	88	131	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.8E-5	89	133	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
METNSSAFSS TTEVESTPSS GGRIVLRIRL PPAWTPEEDA SLERLARENG FRHWRRVAME 60 MQPRGRRSPK QCRDRWRDHL ARDVYHRPFT VDDDAELAHL RLRDGGDRWK DISRAVRCRS 120 SSAMRRRWRE LRKSNAFLRA LYWHPDQPVQ PLLEDALSYS DVVDSSVASY RGGCDAMAGG 180 GTIVAPGLAC LAT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP002092	0.0	AP002092.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0031E09.
GenBank	AP002093	0.0	AP002093.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0466B10.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015636830.1	2e-83	transcription factor MYB3R-5
TrEMBL	A0A0E0JFF9	1e-138	A0A0E0JFF9_ORYPU; Uncharacterized protein
STRING	OPUNC01G06730.1	1e-138	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8360	13	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	4e-15	myb domain protein 73