PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G06940.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 587aa    MW: 60944.3 Da    PI: 7.282
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G06940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.61.1e-34215314285
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssaseceaessss 80 
                      +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l  +                ++++s++ ++s ++
  OPUNC01G06940.1 215 TGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDKLDVLpawqptagaaaagnaAAPPSSSTHPDSAEN 308
                      79**************************************************************887777777776665444444443333333 PP

              TCP  81 sas.ns 85 
                      s++ ++
  OPUNC01G06940.1 309 SDDqAQ 314
                      332022 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-30215289IPR005333Transcription factor, TCP
PROSITE profilePS5136933.257217275IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MRVYPLKGYG IRRGGWTRIG AATVAAGKKA AGDLDPRHHH HRVTHGGDDG GGVGGGGGSG  60
GQEEADEQQQ QQQQQHDHQL LQLHHHHHQG VQDQEPPPVP VFHLQHLQAA SVRQSSGSSP  120
EYALLSPMGD AGGHSHHHHG FQPQLLSFGG VGHHHHLHQF TAQPQPPAAS HTRGRGGGGE  180
IVPATTTPRS RAGGSGGGGS GEIVAVQGGH IVRSTGRKDR HSKVCTARGP RDRRVRLSAH  240
TAIQFYDVQD RLGYDRPSKA VDWLIKNAKD AIDKLDVLPA WQPTAGAAAA GNAAAPPSSS  300
THPDSAENSD DQAQAITVAH TAFDFAGGGS GGTSFLPPSL DSDAIADTIK SFFPMGGTAG  360
GEASSSTAAA QSSAMGFQSY TPDLLSRTGS QSQELRLSLQ SLPDPMFHHH HQQHRHGGGG  420
GNGTTQQALF SGAANYSFGG GAMWAAEQAQ NQRMLPWNVP DPGGGGGGGS TGAYLFNVSQ  480
QAAHMQAAAL GGHQSQFFFQ RGPLQSSNQP SERGWPETVE ADNQMSHHQG GLSPSVSAAI  540
GFAAPGIGFS GFRLPARIQG DEEHNGGGGG NGDKPPPPSS VSSASHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-20222275154Putative transcription factor PCF6
5zkt_B2e-20222275154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0718050.0AB071805.1 Oryza sativa Japonica Group mRNA for transcription factor PCF5, complete cds.
GenBankAK2416580.0AK241658.1 Oryza sativa Japonica Group cDNA, clone: J065191F09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310872.10.0transcription factor PCF5
RefseqXP_021310873.10.0transcription factor PCF5
SwissprotA2WM140.0PCF5_ORYSI; Transcription factor PCF5
TrEMBLA0A0E0JFI70.0A0A0E0JFI7_ORYPU; Uncharacterized protein
STRINGOPUNC01G06940.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.35e-59TCP family protein