PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G07130.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 267aa    MW: 27534.1 Da    PI: 8.0042
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G07130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.5e-1379125354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h+e+ErrRR+riN  +++Lr+l+P        K++Ka+ L ++v ++k+L
  OPUNC01G07130.1  79 KSHSEAERRRRERINAHLATLRTLVPCT-----DKMDKAALLAEVVGHVKKL 125
                      58*************************7.....6**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.39676125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-1079125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-1380130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-1480127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.4E-1282131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.7E-6166232No hitNo description
SuperFamilySSF550214.81E-7167231No hitNo description
CDDcd048734.41E-5167210No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MSSSPFGDAA GGLYEYEGYH GGFAGGHGLG QPGRAPASSV LLEEGETDAM AAAAAATAME  60
MTKKNCAGDR EDKAAMALKS HSEAERRRRE RINAHLATLR TLVPCTDKMD KAALLAEVVG  120
HVKKLKSAAA RVGRRAPVPS GADEVAVDEA SAATGGGGEG SLLLRATLSC DDRADLFVDV  180
KRALQPLGLE VVGSEVTTLG GRVRLTFLVS CGSRDAAAAA MASLHHALQS VLDKASSGFD  240
FAPRASSLLG SKRRKVSSMF ESSSSSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18489ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0685930.0AK068593.1 Oryza sativa Japonica Group cDNA clone:J013152L23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879685.11e-109transcription factor bHLH30
TrEMBLA0A0E0JFM00.0A0A0E0JFM0_ORYPU; Uncharacterized protein
STRINGOPUNC01G07130.20.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110112938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-19bHLH family protein