PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G08000.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 204aa    MW: 23407.5 Da    PI: 10.3865
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G08000.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.82.2e-125192148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l +av+ + g++Wk+I       Rt+ qc +rwqk+l
  OPUNC01G08000.2 51 KGNWTPEEDAILSRAVQTYNGKNWKKI------DRTDVQCLHRWQKVL 92
                     79************************4......69**********986 PP
2Myb_DNA-binding63.73.6e-2098144148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEd+++v+ v++lG++ W+tIa+ ++ gR +kqc++rw+++l
  OPUNC01G08000.2  98 KGPWSKEEDDIIVQMVNKLGPKKWSTIAQALP-GRIGKQCRERWYNHL 144
                      79******************************.*************97 PP
3Myb_DNA-binding52.11.5e-16150192145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE+  lv+a++++G++ W+   + ++ gRt++++k++w+
  OPUNC01G08000.2 150 KEAWTQEEEITLVHAHRMYGNK-WAELTKFLP-GRTDNSIKNHWN 192
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.224692IPR017930Myb domain
SMARTSM007176.8E-95094IPR001005SANT/Myb domain
PfamPF002492.5E-105192IPR001005SANT/Myb domain
SuperFamilySSF466897.59E-1352102IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-2053109IPR009057Homeodomain-like
CDDcd001678.31E-105392No hitNo description
PROSITE profilePS5129430.71293148IPR017930Myb domain
SuperFamilySSF466891.48E-3195191IPR009057Homeodomain-like
SMARTSM007177.7E-1897146IPR001005SANT/Myb domain
PfamPF002492.4E-1898144IPR001005SANT/Myb domain
CDDcd001674.80E-15100144No hitNo description
Gene3DG3DSA:1.10.10.603.5E-26110151IPR009057Homeodomain-like
PROSITE profilePS5129416.298149201IPR017930Myb domain
SMARTSM007172.3E-12149197IPR001005SANT/Myb domain
PfamPF002499.9E-15150193IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-20152194IPR009057Homeodomain-like
CDDcd001671.59E-10152192No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032875Biological Processregulation of DNA endoreduplication
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MMTSDNGKAP DKSGESSGPP PAPQEGEIST EPKRRRPLNG RTTGPTRRST KGNWTPEEDA  60
ILSRAVQTYN GKNWKKIDRT DVQCLHRWQK VLNPELVKGP WSKEEDDIIV QMVNKLGPKK  120
WSTIAQALPG RIGKQCRERW YNHLNPGINK EAWTQEEEIT LVHAHRMYGN KWAELTKFLP  180
GRTDNSIKNH WNSSVYLPKF RVSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-62511956155MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-62511956155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Transcription activator involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00505DAPTransfer from AT5G11510Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constant levels during cell cycle. Activated by CYCB1. {ECO:0000269|PubMed:17287251}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3186010.0AK318601.1 Oryza sativa Japonica Group cDNA, clone: J100066E24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625869.11e-132transcription factor MYB3R-1
SwissprotQ9S7G73e-89MB3R1_ARATH; Transcription factor MYB3R-1
TrEMBLA0A0E0JFX91e-149A0A0E0JFX9_ORYPU; Uncharacterized protein
STRINGOPUNC01G07980.11e-136(Oryza punctata)
STRINGOPUNC01G08000.11e-136(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.11e-91Homeodomain-like protein
Publications ? help Back to Top
  1. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]