PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC01G08520.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 948aa MW: 103712 Da PI: 6.0967

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC01G08520.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.6	1.2e-28	601	652	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l++yFs+++k+AAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ OPUNC01G08520.1 601 AEKTISLDVLQQYFSGSLKNAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 652 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.541	591	672	IPR003035	RWP-RK domain
Pfam	PF02042	6.6E-26	604	652	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.8E-21	844	939	No hit	No description
PROSITE profile	PS51745	18.698	854	936	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	3.1E-25	854	935	No hit	No description
Pfam	PF00564	1.8E-15	854	935	IPR000270	PB1 domain
SMART	SM00666	7.4E-25	854	936	IPR000270	PB1 domain
CDD	cd06407	2.32E-33	855	935	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 948 aa Download sequence Send to blast
MEVDPSSSSA GAGAGGEGGG VGDLWPFDSL TTSLLFSSVS TSPQLPPLPA SSSSWLTPPS 60 PLWLFDERQL LPLDMGPPAV PTTAPPAVAA TPKAADSVVV EDVHRTRSGN SDTTSKRVDQ 120 INSKWQFHLS LDDNTDSSCL FKERLTQALR YFKESTDQHL LVQVWAPVKS GDRYVLTTSG 180 QPFVLDQQSI GLLQYRAVSM MYMFSVDGEN AGELGLPGRV YKQKVPEWTP NVQYYSSTEY 240 PRLNHAISYN VHGTVALPVF DPSVHSCIAV VELIMTSKKI NYAGEVDKVC KALEAVNLKS 300 TEILDHPNVQ ICNEGRQSAL VEILEILTVV CEEHKLPLAQ TWVPCKYRSV LAHGGGVKKS 360 CLSFDGSCMG EVCMSTSDVA FHVIDAHMWG FRDACIEHHL QKGQGVSGKA FIYRRPCFSK 420 DISQFCKLEY PLVHYARMFG LAGCFAICLQ SMYTGDDDYI LEFFMPPNCR NEDDQNAFLE 480 SILARMKKCL RTLKVVGNGD SNEICLQISN VLIIENEDLK TNVHFENSEG CFRESPESNG 540 SQRVHEVDNG DNKVSTMSER HLLADDNSQN NGASVGRPNG SGASDSLHKS NKPPERRRGK 600 AEKTISLDVL QQYFSGSLKN AAKSLGVCPT TMKRICRQHG ISRWPSRKIN KVNRSLSKLK 660 QVIESVQGSD AAFNLTSITG PLPIPVGPSS DSQNIEKASP NKVAELSNLA VEGDRDSSLQ 720 RPIENDGNLA ILLSQQGFID ANNNLQLEAD KASHSRSSSG EGSINSRTSE ASCQGSPANQ 780 TFVCKPIAST FAEPQLIPEA FTKEPFQEPA LPLSRMLIED SGSSKDLKNL FTSAVDQPFL 840 ARSSNLALMQ NSGTVTIKAS FKEDIVRFRF PCSGSVTALK DEVAKRLRMD VGMFDIKYLD 900 DDHEWVKLAC NADLEECMEI SRHSGSHVIR LLVSDVTAHL GSSCGSSG

Sequence ? help Back to Top

Protein Sequence Length: 948 aa Download sequence Send to blast

MEVDPSSSSA GAGAGGEGGG VGDLWPFDSL TTSLLFSSVS TSPQLPPLPA SSSSWLTPPS  60
PLWLFDERQL LPLDMGPPAV PTTAPPAVAA TPKAADSVVV EDVHRTRSGN SDTTSKRVDQ  120
INSKWQFHLS LDDNTDSSCL FKERLTQALR YFKESTDQHL LVQVWAPVKS GDRYVLTTSG  180
QPFVLDQQSI GLLQYRAVSM MYMFSVDGEN AGELGLPGRV YKQKVPEWTP NVQYYSSTEY  240
PRLNHAISYN VHGTVALPVF DPSVHSCIAV VELIMTSKKI NYAGEVDKVC KALEAVNLKS  300
TEILDHPNVQ ICNEGRQSAL VEILEILTVV CEEHKLPLAQ TWVPCKYRSV LAHGGGVKKS  360
CLSFDGSCMG EVCMSTSDVA FHVIDAHMWG FRDACIEHHL QKGQGVSGKA FIYRRPCFSK  420
DISQFCKLEY PLVHYARMFG LAGCFAICLQ SMYTGDDDYI LEFFMPPNCR NEDDQNAFLE  480
SILARMKKCL RTLKVVGNGD SNEICLQISN VLIIENEDLK TNVHFENSEG CFRESPESNG  540
SQRVHEVDNG DNKVSTMSER HLLADDNSQN NGASVGRPNG SGASDSLHKS NKPPERRRGK  600
AEKTISLDVL QQYFSGSLKN AAKSLGVCPT TMKRICRQHG ISRWPSRKIN KVNRSLSKLK  660
QVIESVQGSD AAFNLTSITG PLPIPVGPSS DSQNIEKASP NKVAELSNLA VEGDRDSSLQ  720
RPIENDGNLA ILLSQQGFID ANNNLQLEAD KASHSRSSSG EGSINSRTSE ASCQGSPANQ  780
TFVCKPIAST FAEPQLIPEA FTKEPFQEPA LPLSRMLIED SGSSKDLKNL FTSAVDQPFL  840
ARSSNLALMQ NSGTVTIKAS FKEDIVRFRF PCSGSVTALK DEVAKRLRMD VGMFDIKYLD  900
DDHEWVKLAC NADLEECMEI SRHSGSHVIR LLVSDVTAHL GSSCGSSG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK067319	0.0	AK067319.1 Oryza sativa Japonica Group cDNA clone:J013106K21, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015613020.1	0.0	protein NLP3
Swissprot	Q5NB82	0.0	NLP3_ORYSJ; Protein NLP3
TrEMBL	A0A0E0JG46	0.0	A0A0E0JG46_ORYPU; Uncharacterized protein
STRING	OPUNC01G08520.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4778	36	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7