PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G08840.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 451aa    MW: 46818.9 Da    PI: 8.7915
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G08840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.94.1e-062244123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++Cgk F r  nL+ H r H
  OPUNC01G08840.1 22 FVCEICGKGFQRDQNLQLHRRGH 44
                     89*******************88 PP
2zf-C2H212.90.0003398120123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k++  +s+ k H +t+
  OPUNC01G08840.1  98 WKCDKCSKRYAVQSDWKAHSKTC 120
                      58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.24E-72144No hitNo description
PROSITE profilePS5015711.6142244IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-52244IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0122244IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802444IPR007087Zinc finger, C2H2
SMARTSM003552606393IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-486119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.24E-793118No hitNo description
SMARTSM0035514098118IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MANPEAEVIA LSPRTLMATN RFVCEICGKG FQRDQNLQLH RRGHNLPWKL RQRSGKEPRK  60
RVYVCPEKSC VHHNPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKRYAVQ SDWKAHSKTC  120
GTREYRCDCG TLFSRRDSFI THRAFCDALA EETARLNAAS GAAAAAAAAA TSVCGQSYLF  180
AGSGGPGMAA VRHPNMMLPP PAGANLRAGQ MFGPAAGGVG GDLCDGGVAR HGGLSLWGGE  240
ALPSMGHIGV LASGGAGTVP PQLYADLFAP SSAAPPPFDA AQLNWLYGNG KLSSSNASEL  300
TSATAAAAAK EADSVPSVFS NQQHAKPAAP TDMSATALLQ KAAQIGAVTS TAAMPLASPF  360
EPTKSGATAS PADECGKFDG AALFAASHHN ANLGGAMSEL TAAAGNVPYD VLSAVRHAGL  420
KDAGGVGREE TRDFLGVGVQ ALCSSSIHGW I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-3594161370Zinc finger protein JACKDAW
5b3h_F1e-3594161370Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634949.10.0zinc finger protein NUTCRACKER
SwissprotQ9ZWA61e-127IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A0E0JG800.0A0A0E0JG80_ORYPU; Uncharacterized protein
STRINGOPUNC01G08840.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.11e-118C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]