PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G09800.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 337aa    MW: 33822.9 Da    PI: 9.2629
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G09800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.2e-081341731155
                      HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  OPUNC01G09800.1 134 LRRERIAERMKLLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 173
                      6******************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.405123172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-7133178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-12133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-6134173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-12134190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.98E-9135177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MTSSTRCSPR CRRRGPTWGA AAAAAAQVFD ESALLASRLR HHQIGGAGGG GGDKPVMLQL  60
SDLHRQAGGG GEEDGSGAFS PLPLFTDRTN VPPREEMEGG FKSPNAAAGG EHALFNGFGV  120
HGGGGAGQPP FGQLRRERIA ERMKLLQELV PNANKTDKAS MLDEIIDYVK FLQLQVKVLS  180
MSRLGGAAGV APLVASMSSE GNSNGSSNGG GGKASKGGTG GEGGGGGRGG GGGGGMRVTE  240
QQVAKMMEED MGTAMQYLQG KGLCLMPISL ASAISSATSS ASLLSRPSIR HAGVPPQTML  300
DAAGPTSPAT MSKGGTNGAV GDDPRHAKAD GGAGGTQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225233GGRGGGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0059191e-141AP005919.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0554A06.
GenBankAP0149621e-141AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126141e-141CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642979.11e-131transcription factor bHLH66
TrEMBLA0A0E0JGK30.0A0A0E0JGK3_ORYPU; Uncharacterized protein
STRINGOPUNC01G09800.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.18e-38LJRHL1-like 1