PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G09820.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 472aa    MW: 49637.6 Da    PI: 7.5793
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G09820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH344.8e-115682127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                     +++e C +++rtG C +GdrC+++H++
  OPUNC01G09820.1 56 PGEEDCVYYLRTGACGFGDRCRYNHPR 82
                     5899*********************96 PP
2zf-CCCH37.83.1e-12107131327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C ++++tGtCk+G +Ck++H++
  OPUNC01G09820.1 107 QPICEYYMKTGTCKFGTNCKYHHPK 131
                      799********************96 PP
3zf-CCCH38.42.1e-12151176227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+++++tG+Ck+G +CkF+H++
  OPUNC01G09820.1 151 GEKECSYYMKTGQCKFGTTCKFHHPE 176
                      7899********************96 PP
4zf-CCCH38.32.2e-12304330127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C++++rtG Ck+G++Ck++H++
  OPUNC01G09820.1 304 PGQPDCQYYMRTGDCKFGATCKYHHPR 330
                      5789*********************96 PP
5zf-CCCH322.1e-10353376427
                      ---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                       +C ++a++G+C+yG  Ck+ H++
  OPUNC01G09820.1 353 QPCAYYAQNGYCRYGVACKYDHPM 376
                      69********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.545583IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-75582IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-85782IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-65883IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-56182IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-6104131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.788104132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-7107133IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9107131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5109133IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-6149176IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.371149177IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9151176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-6151176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4155175IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-6303330IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.497303331IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9305330IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5308331IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-5309332IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-6349376IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892349377IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-6350379IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-8353376IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-5353374IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MEQPHAAAAG GGRGGEGEGG GSPDTGLEGP MWRMGLGGGG GGGGQGDAAG RLPERPGEED  60
CVYYLRTGAC GFGDRCRYNH PRDRGGTEFD GGAKNAAALD YPERAGQPIC EYYMKTGTCK  120
FGTNCKYHHP KQDGAVLPVM LNNSGFPIRP GEKECSYYMK TGQCKFGTTC KFHHPEFGGV  180
PMTPGIYPPL QSPSIASPHP YASLANWQMG RPPVVPGSYI PGSYTPMMLS SGMIPLQGWS  240
PYPASVNPVV SGGAQQNVQA GPVYGMGHHG SSSTIAYGGP YVPYASSTGQ SSNNQQEHGF  300
PERPGQPDCQ YYMRTGDCKF GATCKYHHPR ELSAPKSGYM VNSLCLPLRP GAQPCAYYAQ  360
NGYCRYGVAC KYDHPMGTLG YSPSALPLSD MPIAPYPIGF SIATLAPSSP SPDLRPEYIS  420
TKDQSVNQVT SPVAASEPVG SILPKGVFPA DTMMRAQTNT TSGGSSSPGG GC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1119030.0AK111903.1 Oryza sativa Japonica Group cDNA clone:J023093O12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651248.10.0zinc finger CCCH domain-containing protein 6
SwissprotQ5NAW20.0C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A0E0JGK60.0A0A0E0JGK6_ORYPU; Uncharacterized protein
STRINGOPUNC01G09820.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-125C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]