 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
OPUNC01G11990.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
bHLH |
| Protein Properties |
Length: 373aa MW: 40470.7 Da PI: 6.7971 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC01G11990.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 25.9 | 1.8e-08 | 188 | 230 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+ E++RR+r+ ++++ L l+P++ +K + a++ A+eYI++L
OPUNC01G11990.1 188 KKEKQRRQRLTEKYNALMLLIPNR-----TKEDRATVISDAIEYIQEL 230
57*********************9.....8****************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 373 aa
Download sequence Send
to blast |
MTSVLQILVC FGGEMYHPQC ELLMPLESLE LDVGQSHLAA AVAAMPGELN FHLLHSLDAA 60
AAASSTAASA SSLPTVDYFF GGAEQQPPPP VGYNQLAPHH HQTVTMLRDY YGGHYPPAAA 120
ATEAYLRGGP RTAGSSSLVF GPADDESAYM VGPFESSPTP RSGSGGGRKR SRATAGFHGG 180
GPANGVEKKE KQRRQRLTEK YNALMLLIPN RTKEDRATVI SDAIEYIQEL GRTVEELTLL 240
VEKKRRRREM QGDVVDAAPS AAMDQAAESS EGEVAPQRQP IRSTYIQRRS KETFVDVRIV 300
ENDVNIKLTK RRRDGCLAAA SRALDDLRLD LVHLSGGKIG DCHIYMFNTK IHPGSPVFAS 360
AVASRLIEVV DEF
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 166 | 172 | GRKRSRA |
| 2 | 242 | 247 | KKRRRR |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds to the E-box-containing promoter regions of the transcription factors TDR and EAT1, activating their expression. May have a role in specifying the cell pattern of the inner anther walls and functioning in meiosis progression. Required for male reproduction (PubMed:24755456). Acts downstream of UDT1 and GAMYB, but upstream of TDR1 and EAT1 in pollen development (PubMed:24894043). {ECO:0000269|PubMed:24755456, ECO:0000269|PubMed:24894043}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK106850 | 0.0 | AK106850.1 Oryza sativa Japonica Group cDNA clone:002-118-A11, full insert sequence. |
