PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G14340.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 443aa    MW: 48907.5 Da    PI: 4.8449
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G14340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC81.51e-2522122299
            NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                      +  fw ++   ie ++df +h++P+ar+kk+  +++   m++ + P++lsk celf+ el++r+w  a++ +r  +  +dia+a+++t+ +dfl
  OPUNC01G14340.1  22 MDEFWRDRqkeIEMTKDFSEHTIPMARLKKVASSQKGNMMMTFDMPAFLSKMCELFVQELAVRAWACAQSHNRCIILDTDIAEAIASTESYDFL 115
                      678997655669********************************************************************************** PP

            NF-YC  93 vdivprd 99 
                      vdi  ++
  OPUNC01G14340.1 116 VDILHNH 122
                      **98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001252.6E-927106IPR007125Histone H2A/H2B/H3
SuperFamilySSF471138.22E-1644120IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.3E-1845119IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MEQTLEVHRS LRPPMPMAQQ EMDEFWRDRQ KEIEMTKDFS EHTIPMARLK KVASSQKGNM  60
MMTFDMPAFL SKMCELFVQE LAVRAWACAQ SHNRCIILDT DIAEAIASTE SYDFLVDILH  120
NHRVKQKSTP CSTLTTKRCR LVDKPSSSHH PRQHLMPQFG PTCTSTIPIT PSLMPPISQC  180
TPSSFPSLPQ EVFPLMAPTP ILNRSMLFNI ARGLGLQGNN ISAVANNNVL DNIVGCSSST  240
VLASLMSPAL LGPSGAPLNL NSQSYICTMN MINSNDASGS NNSNIIVANQ ASLAPPGHFN  300
PVTLQFPCSS FLHSNKNDMI VAIPEGVDIR NTMHVMSDVD AATTVFNGQE EQHEKETNVE  360
LQDQNEIYES IDIGIINATA RDGNKCNISW DELGMSDDSL LDNFLDEIQV RKDDVLDTRI  420
ALNKDPFLGD VLLSNPSISN GSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-1731119593NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032050.0AP003205.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1146B04.
GenBankAP0038520.0AP003852.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0440D10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635714.10.0uncharacterized protein LOC4326495 isoform X1
RefseqXP_015635723.10.0uncharacterized protein LOC4326495 isoform X2
RefseqXP_015635732.10.0uncharacterized protein LOC4326495 isoform X3
TrEMBLA0A0E0JI660.0A0A0E0JI66_ORYPU; Uncharacterized protein
STRINGOPUNC01G14340.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91742145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.23e-23nuclear factor Y, subunit C4