PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G16830.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 227aa    MW: 25078.6 Da    PI: 6.4011
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G16830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM30.31.2e-09241623128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev..ikev.diykvePwdLpk....kvkaeek.ewyfFskrdkkyatgkrknr.atksgyWk..a 85 
                       Gf+  Pt +elv ++L+++++g +++  ++  i    d   + P dL +    +++ + + e ++F++r++ ++ + r++    + g Wk   
  OPUNC01G16830.1  24 TGFQDAPTVDELVLRHLRPRLRGFHCPDGDApvIGVRdDPAAAAPLDLVArhggAADRR-RgEAFYFVRRRRCHRLSVRRTVgGGAGGQWKhsW 116
                      699999*******************77755442544469*********74334322223.25889999999987754444433455899**555 PP

              NAM  86 tgkdkevlskkgelvglkktLvfy...kgrapkgektdWvmheyrl 128
                      tg+ k+v++ +  + +      fy   +g + ++    Wv+ ey++
  OPUNC01G16830.1 117 TGSGKSVTELGVVVPWREACYCFYrrdEGGRLSTFGGGWVLAEYEI 162
                      999*****955555556667889943333344444678******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-2316188IPR003441NAC domain
PROSITE profilePS5100518.04822189IPR003441NAC domain
PfamPF023655.0E-724162IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MGDDPPDDAG EASDLSSSSH SGATGFQDAP TVDELVLRHL RPRLRGFHCP DGDAPVIGVR  60
DDPAAAAPLD LVARHGGAAD RRRGEAFYFV RRRRCHRLSV RRTVGGGAGG QWKHSWTGSG  120
KSVTELGVVV PWREACYCFY RRDEGGRLST FGGGWVLAEY EITEPSTYRR ADEEEDDDEY  180
WVLCHVRKTA SKKRKRNRRD EAVAAWVVAG MESESESESY TGISYAG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0029680.0AP002968.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0416G11.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637825.11e-104uncharacterized protein LOC107275546
TrEMBLA0A0E0JJ191e-163A0A0E0JJ19_ORYPU; Uncharacterized protein
STRINGOPUNC01G16830.11e-163(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP173721010