PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC01G17100.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 145aa MW: 16334.8 Da PI: 10.2134

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC01G17100.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	34.3	8e-11	36	113	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek....dgkwevtkleleHnHela 90 +fY++YA+++GF+v+ks+ kk ++ +C++egk+ +++ ++++tgCka +k+ + + +++ +el+HnH+l+ OPUNC01G17100.1 36 NFYKRYAYHAGFDVKKSRAKKA-------FHEVCCTREGKHVSKR----------TSKKTGCKAYVKLMHNFvggvVSSRVMDVVELQHNHSLT 112 6*************998887.......7899**998865..........469********99744223334455679***98 PP FAR1 91 p 91 p OPUNC01G17100.1 113 P 113 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.0E-6	36	113	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MATPTPTRVY TQGAGVALHM VPTEGKVFST YDDAYNFYKR YAYHAGFDVK KSRAKKAFHE 60 VCCTREGKHV SKRTSKKTGC KAYVKLMHNF VGGVVSSRVM DVVELQHNHS LTPSPSAVKK 120 MRAHKNRDDT VMQFVDTIQE SHVPL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025882211.1	7e-60	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A0E0JJ50	1e-104	A0A0E0JJ50_ORYPU; Uncharacterized protein
STRING	OPUNC01G17100.1	1e-105	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7609	10	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	4e-12	FAR1-related sequence 8