PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G18080.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 472aa    MW: 51997.3 Da    PI: 8.9519
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G18080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573422.6e-13260350397
           DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksis.fkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                      f+r w+ +Dei++L +l+d   + +  p++  + +++ + ++++  +++++++ eK+r+LK+++++ v         +++k+hd +  els  i
  OPUNC01G18080.1 260 FRRKWNGNDEIMILEALVDQIRSGENVPHEPGHPLFHELAQRLEgRTFNHNDVREKVRSLKRRYNDVVLS-----GLAITKDHDLQLHELSCEI 348
                      899****************98888888999666666666555552789*******************999.....789**************** PP

           DUF573  96 Wg 97 
                      Wg
  OPUNC01G18080.1 349 WG 350
                      *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045048.2E-13260350IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MAAKRVRDSP QIDNAAEVTE GSPPPVAAQS PRAPTRAAES EEEGGDSGKD DVAAPPKGSG  60
SGNAAAPDGL AKSPMKPKKR VTALPLSDHG SRENLAKSPS NEVPTLQEDE AAQDDNPESP  120
PKSKKNLKKK KKKALRAGHS GKDAAPDVPA EPTHTQQDVG EVDGRLAESE QEVPPNAGKA  180
KKKASAQARK KPSAKQHAAQ EEDDDLVVKT EEESAPQQGG EEDSKGSLPQ RKSKRVAALS  240
GNSQPDPKRT KIVDAQKPGF RRKWNGNDEI MILEALVDQI RSGENVPHEP GHPLFHELAQ  300
RLEGRTFNHN DVREKVRSLK RRYNDVVLSG LAITKDHDLQ LHELSCEIWG RSVAHAGDKQ  360
RSLARDEQSS LDRDEQKSFS RDEEKSLASD EQRSFDEMCK QFPLLAKEIK VLVEGQPAIM  420
ELFPRLDGDQ VVAIEKKLEN LRWIDMKRKK KMAVKMAKIR KGLIYKLEEL RS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178190KAKKKASAQARKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0029700.0AP002970.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0504D03.
GenBankAP0032130.0AP003213.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0054L14.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644071.10.0basic salivary proline-rich protein 2
TrEMBLA0A0E0JJG80.0A0A0E0JJG8_ORYPU; Uncharacterized protein
STRINGOPUNC01G18080.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17455910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.12e-07DNA-binding storekeeper protein-related transcriptional regulator