PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G19590.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Nin-like
Protein Properties Length: 315aa    MW: 35014.1 Da    PI: 7.1136
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G19590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK863.3e-27151200352
           RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      ++i +edl++yF++pi++AA+e++v+lTvLK++CR++G++RWPhRk+ksl
  OPUNC01G19590.1 151 DHIGFEDLRRYFYMPITKAAREMNVGLTVLKKRCRELGVARWPHRKMKSL 200
                      6899********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.052133220IPR003035RWP-RK domain
PfamPF020422.3E-21153200IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEMHECCYYG SIVGGDWLNP LAAIPPLCSS SWSPPLLRLR DEVMEMTGYL PMAASAAAAD  60
VDHQYMYHQL EPDHFVSTLP VVAAAAGGGS HDDELLRMPF TDIDLDAFAD ARDVVVGELK  120
ASPQRSLDAA IVLPAGGVHH FATQDDDTRL DHIGFEDLRR YFYMPITKAA REMNVGLTVL  180
KKRCRELGVA RWPHRKMKSL KSLILNEMGS KGMSAAAMRR ELEALENCCS LMERNPAVEL  240
TERTKKLRQA CFKENYKRRR AAAVDVLDLD HCFSFAAAAA AAGHGHRHHH QQLALPAPPR  300
PAAVGGHHRR DFFSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039331e-103AP003933.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0066C06.
GenBankAP0042581e-103AP004258.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0024F24.
GenBankAP0149571e-103AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-103CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645994.11e-93PREDICTED: protein RKD4-like
TrEMBLA0A0E0JK040.0A0A0E0JK04_ORYPU; Uncharacterized protein
STRINGOPUNC01G19590.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128882330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.14e-32RWP-RK domain-containing protein