PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G20250.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 464aa    MW: 47424 Da    PI: 5.5531
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G20250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.21.3e-07356396954
                      HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       r+RR+ri +++  L++l+P  a      K++ a++L +A +Y++ L
  OPUNC01G20250.1 356 ARQRRERISERLRVLQKLVPGgA------KMDTASMLDEAANYLRFL 396
                      69******************966......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.869347396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.72E-11353401No hitNo description
SMARTSM003531.2E-12353402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-13353408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-11355405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-5356396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MDRGYNNEMI LRESVWNGCG IGGGDGDGGA VVLPPEVGGV NAVDGSGMTV LERLVLDEAL  60
AAAILELQGI QAPGCGGGGK VAVVPPTTAG DGGVEAAVAF AAMATGTPAY ADVDADVLQR  120
QRQRHHRHQG AMGMAAEYDV APATPAVTLS AVPPPPPAFA TSAAALDGAG AVDATVFSGI  180
RNDDVDAVSA TMVMNATATT TSQCERVRGG GGGGCGRKQR RPGRKRKAAE STTAAADMPS  240
QDNPLCSLLA SNTGGADGVI QIAFSTSAPA SKRAKPSLSS SSSSISFDGR GPGGNGGGGG  300
YDDPLYEPDT EALAQVKEMI YRAAAMRPVT LGAEDAGERP RRRNVRISSD PQTVAARQRR  360
ERISERLRVL QKLVPGGAKM DTASMLDEAA NYLRFLKSQI RELQTLDRRN YPNATMNTAA  420
ATTMATAAAS SSPTYNNSNA AMPAFAFPET LGCGGGGGGV EQLI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1356361RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0031410.0AP003141.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0002B05.
GenBankAP0032960.0AP003296.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0697C12.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629736.10.0transcription factor LATE FLOWERING-like
RefseqXP_015629741.10.0transcription factor LATE FLOWERING-like
TrEMBLA0A0E0JK830.0A0A0E0JK83_ORYPU; Uncharacterized protein
STRINGOPUNC01G20250.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.12e-34bHLH family protein