PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G20510.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 427aa    MW: 46408.7 Da    PI: 8.1585
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G20510.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2193.9e-06100122123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cgk F r  nL+ H r H
  OPUNC01G20510.1 100 FVCEICGKGFQRDQNLQLHRRGH 122
                      89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.66E-899122No hitNo description
SMARTSM003550.012100122IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-5100122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.614100122IPR007087Zinc finger, C2H2
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
SMARTSM00355110142172IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.66E-8172197No hitNo description
SMARTSM00355160177197IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MFHHHLHHHH HQQQQQQGGG LFLVEEAEAD AASLDQQQES SMSNLTSSAS AAPPPPPPQP  60
SSGNNNNNSN KRKRSLPGNP DPEAEVVALS PATLMATNRF VCEICGKGFQ RDQNLQLHRR  120
GHNLPWKLKQ RGSKEAVRKK VYICPESTCV HHDPSRALGD LTGIKKHFFR KHGEKKWKCD  180
KCSKKYAVHS DWKAHSKICG TREYKCDCGT IFSRRDSFIT HRAFCDALTE ESSKAIGGIP  240
AAMAAPGHHH HHQLLFSPPV MAHQELAALQ EQQHHQDVMQ SPHQQQQLVQ NCGYAVKPEM  300
APATFGLGLS CLNTQQDGGG GGNGLVPAGV MGHLARTASH GRSGEDASGG GGGGGGDGMT  360
RDFLGLRAFS HRDILLAGFD SSCMGHVNAA GMACYEPPHH GQPQSQQQQQ QHQGSSNEPW  420
HGMGSHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-33173234364Zinc finger protein JACKDAW
5b3h_F5e-33173234364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126139KLKQRGSKEAVRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2892090.0AK289209.1 Oryza sativa Japonica Group cDNA, clone: J100058I16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622202.11e-148protein indeterminate-domain 7
TrEMBLA0A0E0JKB60.0A0A0E0JKB6_ORYPU; Uncharacterized protein
STRINGOPUNC01G20510.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-94C2H2-like zinc finger protein