PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G20540.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 251aa    MW: 26743.2 Da    PI: 5.5606
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G20540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601278.7e-4041138198
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      aCaaCk++rr+C+++C la+yfpa+qp++f+n+h+lFG +n+lk++ a+ ee r+dam+s+vye++a++ dPv Ga+g+++ l+q+l ++kael
  OPUNC01G20540.1  41 ACAACKHQRRRCTPECRLARYFPADQPARFRNAHRLFGIKNILKIMGAATEELRDDAMKSVVYESDAWVLDPVGGAAGIVKGLSQELTRVKAEL 134
                      7********************************************************************************************* PP

           DUF260  95 allk 98 
                      a++k
  OPUNC01G20540.1 135 ATVK 138
                      9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.91440141IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-3541138IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGDEADPSSS GHSPSSNTST TPPPPPQPPP LLALPPPHPQ ACAACKHQRR RCTPECRLAR  60
YFPADQPARF RNAHRLFGIK NILKIMGAAT EELRDDAMKS VVYESDAWVL DPVGGAAGIV  120
KGLSQELTRV KAELATVKGL LELHRRAAAQ QQPPVAAVDP NGGFLPLPPP PQAQLLFLPP  180
PPPPILLEQP AALQDGHYDD GTVEDDYLVD LPAAAVDAAA TTTAPERHED GRAPPADFKG  240
EGDHASSMSF R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-214213412104LOB family transfactor Ramosa2.1
5ly0_B3e-214213412104LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126091e-165CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0JKB91e-180A0A0E0JKB9_ORYPU; Uncharacterized protein
STRINGOPUNC01G20540.11e-180(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP158291113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.17e-30LOB domain-containing protein 22