PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G21030.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 311aa    MW: 32769.6 Da    PI: 9.0371
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G21030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.24e-29152211159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK+ kg++ pr+YYrCt a gCpvkk+v+r+++d++++++tY g Hnh+
  OPUNC01G21030.1 152 VKDGCQWRKYGQKTAKGNPWPRGYYRCTGApGCPVKKQVQRCNHDTSILITTYDGVHNHP 211
                      58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.4E-31140211IPR003657WRKY domain
SuperFamilySSF1182901.96E-26145212IPR003657WRKY domain
PROSITE profilePS5081127.278147213IPR003657WRKY domain
SMARTSM007743.7E-35152212IPR003657WRKY domain
PfamPF031061.7E-25153211IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MNTFAFFRDE VQKASEKVQR HHANDDEAGL FLSLGLSLGS SPDAGHASKK DEADAGNGGG  60
DLVGAAGADG YLALALRCDH AAGKPMVHPK RQKATTNSSS SSSSICGEYG DGGGAAAVTA  120
GDDDRPCMIT DASTANRPGR VVLRTRCSAP TVKDGCQWRK YGQKTAKGNP WPRGYYRCTG  180
APGCPVKKQV QRCNHDTSIL ITTYDGVHNH PITPYAAALP SSSSAVAMLT SSSTLSQLQR  240
VMSRRIAMPT AQSSSSWSQK NYPIEADVVA KAVWDPKFQA TVVAAVASYV REQSVASGKG  300
AGERFNLAPP Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-25140214275WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033002e-81AP003300.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0700A11.
GenBankAP0034922e-81AP003492.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0712E02.
GenBankAP0149572e-81AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642021.11e-135probable WRKY transcription factor 72
TrEMBLA0A0E0JKI60.0A0A0E0JKI6_ORYPU; Uncharacterized protein
STRINGOPUNC01G21030.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143192226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.12e-39WRKY DNA-binding protein 9