PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC01G21990.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 150aa MW: 16640.2 Da PI: 4.2104

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC01G21990.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.5	1.9e-07	108	149	1	42
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkre 42 ++Yn+YAk+ GF +++s+ kks+ ++ +++f C e +++ OPUNC01G21990.1 108 DYYNRYAKSWGFGTKVSSCKKSNATKDYNRYEFACCSERTSK 149 69*********************************9998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.6E-5	108	149	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MDFSVGSLEK VLEDVQNKDA SVSADRIASV FAERSVNEEQ DATDVLRAAL IKAGVDTGAI 60 SISQVDEKDG FAIEEATDNE ETEVEGVQSQ PVVPFIGMEF FSEKEARDYY NRYAKSWGFG 120 TKVSSCKKSN ATKDYNRYEF ACCSERTSKE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639432.1	1e-20	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0E0JKU8	1e-104	A0A0E0JKU8_ORYPU; Uncharacterized protein
STRING	OPUNC01G21990.1	1e-105	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16638	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	2e-07	far-red elongated hypocotyls 3