PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC01G22740.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LSD

Protein Properties

Length: 1420aa MW: 147794 Da PI: 3.748

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC01G22740.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	34.3	3.9e-11	1317	1341	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr+lL+Y+rGA +V+C++C+t+ OPUNC01G22740.1 1317 CGSCRILLAYFRGAGYVHCTCCQTM 1341 ***********************96 PP
2	zf-LSD1	38.8	1.5e-12	1355	1379	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C tlL+YP+GAp+V+C+ C +V OPUNC01G22740.1 1355 CGHCATLLMYPFGAPAVKCSFCLFV 1379 **********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.4E-10	1314	1344	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.9E-7	1317	1340	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.2E-7	1353	1380	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	8.5E-10	1355	1379	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 1420 aa Download sequence Send to blast
MASSPETPVP PESTTMGSSP LPHSPSPPLQ GDPSLPTDAP PEPSPQPHHA TPIPPPSPGQ 60 ATEEWPRAEE PPRSPPPPID GTPGAADPPP PLFSSLAPPA LEAAAAGQPV PPSPPRPPAE 120 PPAEFYPRSA ASSPSSSSYE TAEDDSPASP PPTPPPLVLC ASPDSSYTES PARDRFGEEE 180 GSHAAPEQPP PPSPLESRPD ASSAEPAAMA SPAREPMGSH TSPEPATPPL EIGQEGFQQQ 240 QPHPPPTTHP ECDSSEPSEL PLPPSSPAEI AHTSPDAAEV HVVAVTPEEA PGSTVAMEVM 300 YREADTSAVS VSTVLESGQP DAAEIDVIAG MQEEVPGSAL AMVVTYGDND TAAVSMSPLL 360 ESMEPDAAEV DVVAGVQEEA HGSKFSMEVT YGEPDTSAVS VSPGGDVDAA KMDVVAGMQE 420 EAPVSTLAME VTYRVTDAAA ASVSPVLESG DPDATEVDVV AGMQEQTAGS MLAMLVTYRE 480 IDTSAVSVSP VLESGEPDAA QIDVVAGMQE EASGSMLAME VTYSETDATA VSVSPVLDSV 540 EPDAAKIDVV AGMQEEAPGS MLAMEVTYRE TDAAAVSISP VLEHGEPDAA EIDVVARMQE 600 EASGSTLAME VTYGETDTSA VSVSPVLESG DPDATEIDVV TGMQEEAPGS TLAMEVMYGE 660 TDTAAVSVPP VLESGEEGSL QESMQRPSSP AINTEQESMQ RPSSPTIDTE TSLRSLEMAP 720 PGFENCKVSW LPLAPPTLLG ESIPSLPVAA TPKALLVMPE EAVESVPLSE ALDAEKSASI 780 MQAEPSSPNI PPPGFENFKS SWLPLPTTPP PVETADVLPD VVITKAVKAP IEEVSRPLLA 840 LEVTNMESDT VLNILPTEGA EGLLQQALLR PPSPVAQSEP CLQNEMAPPG FENFKSSSEP 900 CSTEEKAPPG SDNFKSSSEP CSPEEMAPPG FENFKSSFEP CSSEEMAPPG FENFKSSWPP 960 LPTMPQTAYA LPDAAAADAL AATVEEAAGP PPALELEAMD VDMDAIHPPP LPFDSGVESS 1020 QKPLSRAPSP IMQEAPCSPD RAPPGFETYK SSQLLLPSPS LAQTTNVRQD QSVTEPVSVT 1080 EEAPQPLHSV EVMGAHMDAV PPLLPSSESG ADGLSPQQFP QPPPAEKGTT TCLPDMVHSG 1140 CDDLEPSQLL PLPAVISPVQ TPDGLADVPA VDRVAVASEE SPQRPLVSGE MEAGTVPIQS 1200 SPLKNASEGS LPQLESESHS PTSQAADSLL DASGSKSVAV ASEEMSQPPL ALQATTTDLV 1260 STTAMQPQSE GIVDESLQHQ HPPSSTVHDA PCLQDSVPLV PPPPSPYLNK EVGQMVCGSC 1320 RILLAYFRGA GYVHCTCCQT MNYVLEAHEV GKVHCGHCAT LLMYPFGAPA VKCSFCLFVT 1380 EIGISDASGW LYELNHYPDR SGMFAVGYQS SNPQELTHQG

Sequence ? help Back to Top

Protein Sequence Length: 1420 aa Download sequence Send to blast

MASSPETPVP PESTTMGSSP LPHSPSPPLQ GDPSLPTDAP PEPSPQPHHA TPIPPPSPGQ  60
ATEEWPRAEE PPRSPPPPID GTPGAADPPP PLFSSLAPPA LEAAAAGQPV PPSPPRPPAE  120
PPAEFYPRSA ASSPSSSSYE TAEDDSPASP PPTPPPLVLC ASPDSSYTES PARDRFGEEE  180
GSHAAPEQPP PPSPLESRPD ASSAEPAAMA SPAREPMGSH TSPEPATPPL EIGQEGFQQQ  240
QPHPPPTTHP ECDSSEPSEL PLPPSSPAEI AHTSPDAAEV HVVAVTPEEA PGSTVAMEVM  300
YREADTSAVS VSTVLESGQP DAAEIDVIAG MQEEVPGSAL AMVVTYGDND TAAVSMSPLL  360
ESMEPDAAEV DVVAGVQEEA HGSKFSMEVT YGEPDTSAVS VSPGGDVDAA KMDVVAGMQE  420
EAPVSTLAME VTYRVTDAAA ASVSPVLESG DPDATEVDVV AGMQEQTAGS MLAMLVTYRE  480
IDTSAVSVSP VLESGEPDAA QIDVVAGMQE EASGSMLAME VTYSETDATA VSVSPVLDSV  540
EPDAAKIDVV AGMQEEAPGS MLAMEVTYRE TDAAAVSISP VLEHGEPDAA EIDVVARMQE  600
EASGSTLAME VTYGETDTSA VSVSPVLESG DPDATEIDVV TGMQEEAPGS TLAMEVMYGE  660
TDTAAVSVPP VLESGEEGSL QESMQRPSSP AINTEQESMQ RPSSPTIDTE TSLRSLEMAP  720
PGFENCKVSW LPLAPPTLLG ESIPSLPVAA TPKALLVMPE EAVESVPLSE ALDAEKSASI  780
MQAEPSSPNI PPPGFENFKS SWLPLPTTPP PVETADVLPD VVITKAVKAP IEEVSRPLLA  840
LEVTNMESDT VLNILPTEGA EGLLQQALLR PPSPVAQSEP CLQNEMAPPG FENFKSSSEP  900
CSTEEKAPPG SDNFKSSSEP CSPEEMAPPG FENFKSSFEP CSSEEMAPPG FENFKSSWPP  960
LPTMPQTAYA LPDAAAADAL AATVEEAAGP PPALELEAMD VDMDAIHPPP LPFDSGVESS  1020
QKPLSRAPSP IMQEAPCSPD RAPPGFETYK SSQLLLPSPS LAQTTNVRQD QSVTEPVSVT  1080
EEAPQPLHSV EVMGAHMDAV PPLLPSSESG ADGLSPQQFP QPPPAEKGTT TCLPDMVHSG  1140
CDDLEPSQLL PLPAVISPVQ TPDGLADVPA VDRVAVASEE SPQRPLVSGE MEAGTVPIQS  1200
SPLKNASEGS LPQLESESHS PTSQAADSLL DASGSKSVAV ASEEMSQPPL ALQATTTDLV  1260
STTAMQPQSE GIVDESLQHQ HPPSSTVHDA PCLQDSVPLV PPPPSPYLNK EVGQMVCGSC  1320
RILLAYFRGA GYVHCTCCQT MNYVLEAHEV GKVHCGHCAT LLMYPFGAPA VKCSFCLFVT  1380
EIGISDASGW LYELNHYPDR SGMFAVGYQS SNPQELTHQG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP002866	0.0	AP002866.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0410E01.
GenBank	AP003314	0.0	AP003314.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0046B10.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015621461.1	0.0	protein LOL5
TrEMBL	A0A0E0JL40	0.0	A0A0E0JL40_ORYPU; Uncharacterized protein
STRING	OPUNC01G22740.4	0.0	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	1e-27	lsd one like 2