PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC01G22740.2

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LSD

Protein Properties

Length: 1288aa MW: 134409 Da PI: 3.8037

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC01G22740.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	34.5	3.5e-11	1185	1209	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr+lL+Y+rGA +V+C++C+t+ OPUNC01G22740.2 1185 CGSCRILLAYFRGAGYVHCTCCQTM 1209 ***********************96 PP
2	zf-LSD1	39	1.3e-12	1223	1247	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C tlL+YP+GAp+V+C+ C +V OPUNC01G22740.2 1223 CGHCATLLMYPFGAPAVKCSFCLFV 1247 **********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.3E-10	1182	1212	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.7E-7	1185	1208	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.1E-7	1221	1248	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	7.7E-10	1223	1247	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 1288 aa Download sequence Send to blast
MASSPETPVP PESTTMGSSP LPHSPSPPLQ GDPSLPTDAP PEPSPQPHHA TPIPPPSPGQ 60 ATEEWPRAEE PPRSPPPPID GTPGAADPPP PLFSSLAPPA LEAAAAGQPV PPSPPRPPAE 120 PPAEFYPRSA ASSPSSSSYE TAEDDSPASP PPTPPPLVLC ASPDSSYTES PARDRFGEEE 180 GSHAAPEQPP PPSPLESRPD ASSAEPAAMA SPAREPMGSH TSPEPATPPL EIGQEGFQQQ 240 QPHPPPTTHP ECDSSEPSEL PLPPSSPAEI AHTSPDAAEV HVVAVTPEEA PGSTVAMEVM 300 YREADTSAVS VSTVLESGQP DAAEIDVIAG MQEEVPGSAL AMVVTYGDND TAAVSMSPLL 360 ESMEPDAAEV DVVAGVQEEA HGSKFSMEVT YSETDATAVS VSPVLDSVEP DAAKIDVVAG 420 MQEEAPGSML AMEVTYRETD AAAVSISPVL EHGEPDAAEI DVVARMQEEA SGSTLAMEVT 480 YGETDTSAVS VSPVLESGDP DATEIDVVTG MQEEAPGSTL AMEVMYGETD TAAVSVPPVL 540 ESGEEGSLQE SMQRPSSPAI NTEQESMQRP SSPTIDTETS LRSLEMAPPG FENCKVSWLP 600 LAPPTLLGES IPSLPVAATP KALLVMPEEA VESVPLSEAL DAEKSASIMQ AEPSSPNIPP 660 PGFENFKSSW LPLPTTPPPV ETADVLPDVV ITKAVKAPIE EVSRPLLALE VTNMESDTVL 720 NILPTEGAEG LLQQALLRPP SPVAQSEPCL QNEMAPPGFE NFKSSSEPCS TEEKAPPGSD 780 NFKSSSEPCS PEEMAPPGFE NFKSSFEPCS SEEMAPPGFE NFKSSWPPLP TMPQTAYALP 840 DAAAADALAA TVEEAAGPPP ALELEAMDVD MDAIHPPPLP FDSGVESSQK PLSRAPSPIM 900 QEAPCSPDRA PPGFETYKSS QLLLPSPSLA QTTNVRQDQS VTEPVSVTEE APQPLHSVEV 960 MGAHMDAVPP LLPSSESGAD GLSPQQFPQP PPAEKGTTTC LPDMVHSGCD DLEPSQLLPL 1020 PAVISPVQTP DGLADVPAVD RVAVASEESP QRPLVSGEME AGTVPIQSSP LKNASEGSLP 1080 QLESESHSPT SQAADSLLDA SGSKSVAVAS EEMSQPPLAL QATTTDLVST TAMQPQSEGI 1140 VDESLQHQHP PSSTVHDAPC LQDSVPLVPP PPSPYLNKEV GQMVCGSCRI LLAYFRGAGY 1200 VHCTCCQTMN YVLEAHEVGK VHCGHCATLL MYPFGAPAVK CSFCLFVTEI GISDASGWLY 1260 ELNHYPDRSG MFAVGYQSSN PQELTHQG

Sequence ? help Back to Top

Protein Sequence Length: 1288 aa Download sequence Send to blast

MASSPETPVP PESTTMGSSP LPHSPSPPLQ GDPSLPTDAP PEPSPQPHHA TPIPPPSPGQ  60
ATEEWPRAEE PPRSPPPPID GTPGAADPPP PLFSSLAPPA LEAAAAGQPV PPSPPRPPAE  120
PPAEFYPRSA ASSPSSSSYE TAEDDSPASP PPTPPPLVLC ASPDSSYTES PARDRFGEEE  180
GSHAAPEQPP PPSPLESRPD ASSAEPAAMA SPAREPMGSH TSPEPATPPL EIGQEGFQQQ  240
QPHPPPTTHP ECDSSEPSEL PLPPSSPAEI AHTSPDAAEV HVVAVTPEEA PGSTVAMEVM  300
YREADTSAVS VSTVLESGQP DAAEIDVIAG MQEEVPGSAL AMVVTYGDND TAAVSMSPLL  360
ESMEPDAAEV DVVAGVQEEA HGSKFSMEVT YSETDATAVS VSPVLDSVEP DAAKIDVVAG  420
MQEEAPGSML AMEVTYRETD AAAVSISPVL EHGEPDAAEI DVVARMQEEA SGSTLAMEVT  480
YGETDTSAVS VSPVLESGDP DATEIDVVTG MQEEAPGSTL AMEVMYGETD TAAVSVPPVL  540
ESGEEGSLQE SMQRPSSPAI NTEQESMQRP SSPTIDTETS LRSLEMAPPG FENCKVSWLP  600
LAPPTLLGES IPSLPVAATP KALLVMPEEA VESVPLSEAL DAEKSASIMQ AEPSSPNIPP  660
PGFENFKSSW LPLPTTPPPV ETADVLPDVV ITKAVKAPIE EVSRPLLALE VTNMESDTVL  720
NILPTEGAEG LLQQALLRPP SPVAQSEPCL QNEMAPPGFE NFKSSSEPCS TEEKAPPGSD  780
NFKSSSEPCS PEEMAPPGFE NFKSSFEPCS SEEMAPPGFE NFKSSWPPLP TMPQTAYALP  840
DAAAADALAA TVEEAAGPPP ALELEAMDVD MDAIHPPPLP FDSGVESSQK PLSRAPSPIM  900
QEAPCSPDRA PPGFETYKSS QLLLPSPSLA QTTNVRQDQS VTEPVSVTEE APQPLHSVEV  960
MGAHMDAVPP LLPSSESGAD GLSPQQFPQP PPAEKGTTTC LPDMVHSGCD DLEPSQLLPL  1020
PAVISPVQTP DGLADVPAVD RVAVASEESP QRPLVSGEME AGTVPIQSSP LKNASEGSLP  1080
QLESESHSPT SQAADSLLDA SGSKSVAVAS EEMSQPPLAL QATTTDLVST TAMQPQSEGI  1140
VDESLQHQHP PSSTVHDAPC LQDSVPLVPP PPSPYLNKEV GQMVCGSCRI LLAYFRGAGY  1200
VHCTCCQTMN YVLEAHEVGK VHCGHCATLL MYPFGAPAVK CSFCLFVTEI GISDASGWLY  1260
ELNHYPDRSG MFAVGYQSSN PQELTHQG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK065375	0.0	AK065375.1 Oryza sativa Japonica Group cDNA clone:J013008L21, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015621461.1	0.0	protein LOL5
TrEMBL	A0A0E0JL41	0.0	A0A0E0JL41_ORYPU; Uncharacterized protein
STRING	OPUNC01G22740.4	0.0	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	2e-27	lsd one like 2