PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC01G22740.4

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LSD

Protein Properties

Length: 1549aa MW: 161158 Da PI: 3.7266

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC01G22740.4	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	34.2	4.2e-11	1459	1483	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr+lL+Y+rGA +V+C++C+t+ OPUNC01G22740.4 1459 CGSCRILLAYFRGAGYVHCTCCQTM 1483 ***********************96 PP
2	zf-LSD1	38.7	1.6e-12	1497	1521	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C tlL+YP+GAp+V+C+ C +V OPUNC01G22740.4 1497 CGHCATLLMYPFGAPAVKCSFCLFV 1521 **********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.5E-10	1456	1486	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.1E-7	1459	1482	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.3E-7	1495	1522	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	9.4E-10	1497	1521	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 1549 aa Download sequence Send to blast
MASSPETPVP PESTTMGSSP LPHSPSPPLQ GDPSLPTDAP PEPSPQPHHA TPIPPPSPGQ 60 ATEEWPRAEE PPRSPPPPID GTPGAADPPP PLFSSLAPPA LEAAAAGQPV PPSPPRPPAE 120 PPAEFYPRSA ASSPSSSSYE TAEDDSPASP PPTPPPLVLC ASPDSSYTES PARDRFGEEE 180 GSHAAPEQPP PPSPLESRPD ASSAEPAAMA SPAREPMGSH TSPEPATPPL EIGQEGFQQQ 240 QPHPPPTTHP ECDSSEPSEL PLPPSSPAEI AHTSPDAAEV HVVAVTPEEA PGSTVAMEVM 300 YREADTSAVS VSTVLESGQP DAAEIDVIAG MQEEVPGSAL AMVVTYGDND TAAVSMSPLL 360 ESMEPDAAEV DVVAGVQEEA HGSKFSMEVT YGEPDTSAVS VSPVLESVEP PDAAEIDVVS 420 EIQEKEAPDS TLAMVVTSGE TNTAAVSVSP VLESGEPNAA KIDVVAEMQE EAHCSRFAME 480 VTYGEPDTSA VSVSPVSDNV EPPDAAEIDV VSEMQEKEAP DSTLAMVVMS GETNTTAVSV 540 TSILEGGDVD AAKMDVVAGM QEEAPVSTLA MEVTYRVTDA AAASVSPVLE SGDPDATEVD 600 VVAGMQEQTA GSMLAMLVTY REIDTSAVSV SPVLESGEPD AAQIDVVAGM QEEASGSMLA 660 MEVTYSETDA TAVSVSPVLD SVEPDAAKID VVAGMQEEAP GSMLAMEVTY RETDAAAVSI 720 SPVLEHGEPD AAEIDVVARM QEEASGSTLA MEVTYGETDT SAVSVSPVLE SGDPDATEID 780 VVTGMQEEAP GSTLAMEVMY GETDTAAVSV PPVLESGEEG SLQESMQRPS SPAINTEQES 840 MQRPSSPTID TETSLRSLEM APPGFENCKV SWLPLAPPTL LGESIPSLPV AATPKALLVM 900 PEEAVESVPL SEALDAEKSA SIMQAEPSSP NIPPPGFENF KSSWLPLPTT PPPVETADVL 960 PDVVITKAVK APIEEVSRPL LALEVTNMES DTVLNILPTE GAEGLLQQAL LRPPSPVAQS 1020 EPCLQNEMAP PGFENFKSSS EPCSTEEKAP PGSDNFKSSS EPCSPEEMAP PGFENFKSSF 1080 EPCSSEEMAP PGFENFKSSW PPLPTMPQTA YALPDAAAAD ALAATVEEAA GPPPALELEA 1140 MDVDMDAIHP PPLPFDSGVE SSQKPLSRAP SPIMQEAPCS PDRAPPGFET YKSSQLLLPS 1200 PSLAQTTNVR QDQSVTEPVS VTEEAPQPLH SVEVMGAHMD AVPPLLPSSE SGADGLSPQQ 1260 FPQPPPAEKG TTTCLPDMVH SGCDDLEPSQ LLPLPAVISP VQTPDGLADV PAVDRVAVAS 1320 EESPQRPLVS GEMEAGTVPI QSSPLKNASE GSLPQLESES HSPTSQAADS LLDASGSKSV 1380 AVASEEMSQP PLALQATTTD LVSTTAMQPQ SEGIVDESLQ HQHPPSSTVH DAPCLQDSVP 1440 LVPPPPSPYL NKEVGQMVCG SCRILLAYFR GAGYVHCTCC QTMNYVLEAH EVGKVHCGHC 1500 ATLLMYPFGA PAVKCSFCLF VTEIGERNVR RRLSIEQPTR TNSSGLAEA

Sequence ? help Back to Top

Protein Sequence Length: 1549 aa Download sequence Send to blast

MASSPETPVP PESTTMGSSP LPHSPSPPLQ GDPSLPTDAP PEPSPQPHHA TPIPPPSPGQ  60
ATEEWPRAEE PPRSPPPPID GTPGAADPPP PLFSSLAPPA LEAAAAGQPV PPSPPRPPAE  120
PPAEFYPRSA ASSPSSSSYE TAEDDSPASP PPTPPPLVLC ASPDSSYTES PARDRFGEEE  180
GSHAAPEQPP PPSPLESRPD ASSAEPAAMA SPAREPMGSH TSPEPATPPL EIGQEGFQQQ  240
QPHPPPTTHP ECDSSEPSEL PLPPSSPAEI AHTSPDAAEV HVVAVTPEEA PGSTVAMEVM  300
YREADTSAVS VSTVLESGQP DAAEIDVIAG MQEEVPGSAL AMVVTYGDND TAAVSMSPLL  360
ESMEPDAAEV DVVAGVQEEA HGSKFSMEVT YGEPDTSAVS VSPVLESVEP PDAAEIDVVS  420
EIQEKEAPDS TLAMVVTSGE TNTAAVSVSP VLESGEPNAA KIDVVAEMQE EAHCSRFAME  480
VTYGEPDTSA VSVSPVSDNV EPPDAAEIDV VSEMQEKEAP DSTLAMVVMS GETNTTAVSV  540
TSILEGGDVD AAKMDVVAGM QEEAPVSTLA MEVTYRVTDA AAASVSPVLE SGDPDATEVD  600
VVAGMQEQTA GSMLAMLVTY REIDTSAVSV SPVLESGEPD AAQIDVVAGM QEEASGSMLA  660
MEVTYSETDA TAVSVSPVLD SVEPDAAKID VVAGMQEEAP GSMLAMEVTY RETDAAAVSI  720
SPVLEHGEPD AAEIDVVARM QEEASGSTLA MEVTYGETDT SAVSVSPVLE SGDPDATEID  780
VVTGMQEEAP GSTLAMEVMY GETDTAAVSV PPVLESGEEG SLQESMQRPS SPAINTEQES  840
MQRPSSPTID TETSLRSLEM APPGFENCKV SWLPLAPPTL LGESIPSLPV AATPKALLVM  900
PEEAVESVPL SEALDAEKSA SIMQAEPSSP NIPPPGFENF KSSWLPLPTT PPPVETADVL  960
PDVVITKAVK APIEEVSRPL LALEVTNMES DTVLNILPTE GAEGLLQQAL LRPPSPVAQS  1020
EPCLQNEMAP PGFENFKSSS EPCSTEEKAP PGSDNFKSSS EPCSPEEMAP PGFENFKSSF  1080
EPCSSEEMAP PGFENFKSSW PPLPTMPQTA YALPDAAAAD ALAATVEEAA GPPPALELEA  1140
MDVDMDAIHP PPLPFDSGVE SSQKPLSRAP SPIMQEAPCS PDRAPPGFET YKSSQLLLPS  1200
PSLAQTTNVR QDQSVTEPVS VTEEAPQPLH SVEVMGAHMD AVPPLLPSSE SGADGLSPQQ  1260
FPQPPPAEKG TTTCLPDMVH SGCDDLEPSQ LLPLPAVISP VQTPDGLADV PAVDRVAVAS  1320
EESPQRPLVS GEMEAGTVPI QSSPLKNASE GSLPQLESES HSPTSQAADS LLDASGSKSV  1380
AVASEEMSQP PLALQATTTD LVSTTAMQPQ SEGIVDESLQ HQHPPSSTVH DAPCLQDSVP  1440
LVPPPPSPYL NKEVGQMVCG SCRILLAYFR GAGYVHCTCC QTMNYVLEAH EVGKVHCGHC  1500
ATLLMYPFGA PAVKCSFCLF VTEIGERNVR RRLSIEQPTR TNSSGLAEA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK065375	0.0	AK065375.1 Oryza sativa Japonica Group cDNA clone:J013008L21, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015621461.1	0.0	protein LOL5
TrEMBL	A0A0E0JL43	0.0	A0A0E0JL43_ORYPU; Uncharacterized protein
STRING	OPUNC01G22740.4	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13395	25	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	2e-29	lsd one like 2