PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G23470.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 337aa    MW: 36642.5 Da    PI: 6.5598
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G23470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.15.6e-33261181102
                      HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
     HSF_DNA-bind   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                      aF+ k+y+++ d++++ l++w +++nsfvv+d+  f++ +Lp +Fkh nf+SFvRQLn+YgF+kv+ ++         weF+h+sF +g+++ll
  OPUNC01G23470.1  26 AFVAKTYQMVCDPRTDALVRWGRDNNSFVVVDPAAFSQLLLPCFFKHGNFSSFVRQLNTYGFRKVHPDR---------WEFAHESFLRGQTHLL 110
                      69****************************************************************999.........**************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  95 ekikrkks 102
                       +i r+k+
  OPUNC01G23470.1 111 PRIVRRKK 118
                      *****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.5E-3622116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.3E-5123116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.36E-3324116IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.2E-2927116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-162750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-166577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-167890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MDGLHTELAL GLIGCCGGDG QQQTAAFVAK TYQMVCDPRT DALVRWGRDN NSFVVVDPAA  60
FSQLLLPCFF KHGNFSSFVR QLNTYGFRKV HPDRWEFAHE SFLRGQTHLL PRIVRRKKRG  120
EGGSGGGSCS FGGGFGGAGE KHVAAAASMG MSGEEEDAAE DDVLAKEAAL FEEVQRLRHE  180
QTAIGEELAR MSQRLQATER RPDQLMSFLA KLADDPNAVT GHLLEQAAER KRRRQHLPSH  240
EPTVSPLPPA PPPQPPQPLL ALAGAAAMDG TCWQWTEHHH HHQMKPMTVL PSLEPPTASC  300
GVQQVPELGG GGVMGLTDGE AKVEPPFPFC LLGQAFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-231711619129Heat shock factor protein 1
5d5v_B5e-231711619129Heat shock factor protein 1
5d5v_D5e-231711619129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229233RKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0694790.0AK069479.1 Oryza sativa Japonica Group cDNA clone:J023019J23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636084.10.0heat stress transcription factor C-1a
SwissprotQ6VBA40.0HFC1A_ORYSJ; Heat stress transcription factor C-1a
TrEMBLA0A0E0JLD40.0A0A0E0JLD4_ORYPU; Uncharacterized protein
STRINGOPUNC01G23470.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-56heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]