PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G23910.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 90aa    MW: 9927.86 Da    PI: 8.9442
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G23910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.63.7e-101157346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      WT++  +++ +a + + ++   +W+ +ar+mg ++++++++ ++  
  OPUNC01G23910.1 11 EWTKQQNKQFERALAVYDTDapdRWHNVARYMGGTKSAEEVRRHYER 57
                     7*******************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.349763IPR017884SANT domain
SMARTSM007175.1E-8861IPR001005SANT/Myb domain
SuperFamilySSF466893.59E-111059IPR009057Homeodomain-like
PfamPF002493.8E-81157IPR001005SANT/Myb domain
CDDcd001671.12E-71158No hitNo description
Gene3DG3DSA:1.10.10.601.2E-41157IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MASSSKDSSS EWTKQQNKQF ERALAVYDTD APDRWHNVAR YMGGTKSAEE VRRHYERLEV  60
DVERIEAGGV PSSLGYGATP PAGRGGAGRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-19371269RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043171e-106AP004317.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0663E10.
GenBankAP0072511e-106AP007251.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, fosmid clone:OSJNOa234E14.
GenBankAP0149571e-106AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-106CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638756.17e-45protein RADIALIS-like 3
SwissprotQ1A1734e-25RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A0E0JLI72e-59A0A0E0JLI7_ORYPU; Uncharacterized protein
STRINGOPUNC01G23910.13e-60(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.23e-24RAD-like 6