PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G25350.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 179aa    MW: 19377.7 Da    PI: 7.0733
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G25350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.11.2e-0911342045
                     TTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding 20 GggtWktIartmgkgRtlkqcksrwq 45
                     Gg+ W++Ia+ ++ gRt++++k++w+
  OPUNC01G25350.1 11 GGR-WSKIAKQLP-GRTDNEIKNFWR 34
                     677.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.816141IPR017930Myb domain
SuperFamilySSF466891.4E-71041IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.2E-121136IPR009057Homeodomain-like
PfamPF002492.3E-71135IPR001005SANT/Myb domain
CDDcd001671.78E-71234No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MEYARAPFIS GGRWSKIAKQ LPGRTDNEIK NFWRSKIQKK RKPQLGEATA AAAAAAAFVT  60
ADGQASANTS QGSSTLLQGG VSSADLSAAA SMFSSGHNQS LAAGGVAMSS LPELVAESSD  120
NFSWAFEDLW PAMAPTQPFN FSLDDRLDIT LRQQLLYALS EVLRLHVQNH FSFHFCEHL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0JM111e-128A0A0E0JM11_ORYPU; Uncharacterized protein
STRINGOPUNC01G25350.11e-129(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5509122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40350.12e-17myb domain protein 24