PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G25390.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 91aa    MW: 10318.4 Da    PI: 6.5313
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G25390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.8e-082064344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      W++ E +l+ +a + +G g    +++++r mg ++t+ +++ ++
  OPUNC01G25390.1 20 EWSKKENKLFEEALAYYGDGapdLFHKVSRAMGGTKTADEVRRHY 64
                     7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.0E-41770IPR001005SANT/Myb domain
SuperFamilySSF466891.53E-101974IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-42066IPR009057Homeodomain-like
CDDcd001677.45E-42064No hitNo description
PfamPF002491.7E-62064IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MSSGSSSSSR NSNSVNMESE WSKKENKLFE EALAYYGDGA PDLFHKVSRA MGGTKTADEV  60
RRHYEILEDD LKLIEARRVP FPKYNTQGAW N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-1921891178RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032841e-134AP003284.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0671D01.
GenBankAP0149571e-134AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458271.12e-42protein RADIALIS-like 3
SwissprotQ6NNN05e-20RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A0E0JM153e-61A0A0E0JM15_ORYPU; Uncharacterized protein
STRINGOPUNC01G25390.15e-62(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.24e-20RAD-like 6