PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G25580.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 380aa    MW: 39821.5 Da    PI: 7.3073
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G25580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.62.6e-33180237259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers +dp vv++tYeg+H+h+
  OPUNC01G25580.1 180 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCPVKKRVERSYQDPAVVITTYEGKHTHP 237
                      8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-35164239IPR003657WRKY domain
SuperFamilySSF1182901.07E-29171239IPR003657WRKY domain
PROSITE profilePS5081132.535174239IPR003657WRKY domain
SMARTSM007742.6E-39179238IPR003657WRKY domain
PfamPF031061.9E-26180237IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MSGEYQFQDE LAPLFARPGV AGEMQMQQQM LPSSWFADYL QAGTPMQMDY DLMCRALELP  60
VGEDVKREVG VVDVVTAGGG GGVGAAPLTP NTTSSMSTSS SEGVGGGGGG GGGAGEEDSP  120
ARCKKEEEDE NKEEGKGEEE EGHKNKKGSA AKGGKAGKGE KRARQPRFAF MTKSEVDHLE  180
DGYRWRKYGQ KAVKNSPYPR SYYRCTTQKC PVKKRVERSY QDPAVVITTY EGKHTHPIPA  240
TLRGSTHLLA AHAQAAAAAA HMHHHHHHGM PPPPLGSGGQ LGRLGGGTGI DVLGFLQPRA  300
PHHGMSPVTT AATSPGLITS GISGGGGVSS ATTTNAAVTV AASPQSSSSA ALQMQHFTAQ  360
DLGLLQDMLL PSFVHGTNQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-28170240878Probable WRKY transcription factor 4
2lex_A5e-28170240878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418440.0AY341844.1 Oryza sativa (japonica cultivar-group) WRKY3 mRNA, complete cds.
GenBankAY3418550.0AY341855.1 Oryza sativa (japonica cultivar-group) WRKY14 mRNA, complete cds.
GenBankAY8706040.0AY870604.1 Oryza sativa (japonica cultivar-group) WRKY16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025875631.11e-140WRKY transcription factor WRKY24-like isoform X2
TrEMBLA0A0E0JM440.0A0A0E0JM44_ORYPU; Uncharacterized protein
STRINGOPUNC01G25580.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.14e-49WRKY DNA-binding protein 71