PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G25930.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 720aa    MW: 78803.6 Da    PI: 7.3535
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G25930.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.37e-24149250199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k+lt sd++++g +++p++ ae++      +++ + s++l+ +d++g +W++++iyr++++r++lt+GW++F + ++L +gD v+F   + +
  OPUNC01G25930.1 149 FCKTLTASDTSTHGGFSVPRRAAEDCfppldySLQRP-SQELVAKDLHGTEWRFRHIYRGQPRRHLLTTGWSGFINKKKLVSGDAVLFL--RGE 239
                      99****************************9966654.569************************************************..449 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      ++el+++v+r+
  OPUNC01G25930.1 240 DGELRLGVRRA 250
                      999*****996 PP
2Auxin_resp108.38.3e-36275355182
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                      +aha++ ks+F+++YnPr s+seF+++++k+++++++++svGmRfk+++e+ed+serr +G+++g +++dp  W++SkW++L
  OPUNC01G25930.1 275 VAHAVAVKSIFHIYYNPRLSQSEFIIPYWKFMRSFSQPFSVGMRFKLRYESEDASERRRTGIIIGSREADP-MWHGSKWKCL 355
                      799********************************************************************.9********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.3E-39144253IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-43146286IPR015300DNA-binding pseudobarrel domain
CDDcd100175.81E-22147249No hitNo description
PfamPF023627.2E-22149250IPR003340B3 DNA binding domain
SMARTSM010191.4E-22149251IPR003340B3 DNA binding domain
PROSITE profilePS5086313.281149251IPR003340B3 DNA binding domain
PfamPF065071.8E-29275355IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MVGIDLNTVE EEEDEEEGGA TGTVTAPAPS RAGGAVCLEL WHACAGPVAP LPRKGSAVVY  60
LPQGHLEHLG AAPGPGAAAV AAVPPHVFCR VVDVSLHADA ATDEVYAQVS LVADNEEAER  120
RMREGENGAA CDGEGEDVMK RPARIPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY  180
SLQRPSQELV AKDLHGTEWR FRHIYRGQPR RHLLTTGWSG FINKKKLVSG DAVLFLRGED  240
GELRLGVRRA AQLKNVSPFP ALHNQISNTS SLSEVAHAVA VKSIFHIYYN PRLSQSEFII  300
PYWKFMRSFS QPFSVGMRFK LRYESEDASE RRRTGIIIGS READPMWHGS KWKCLVVKWD  360
DDVECRRPNG VSPWEIELSG SVSGSHLSTP HSKRLKSCFT QVNPDIVLPN GSVSSDFAES  420
ARFHKVLQGQ ELLGLKTRDG TVNTASQATE ARNFQYTDER SCSINMSNNI LGVPRLGVKT  480
PSGNPGFSYH CSGFGESQRF QEVLQGQEVF RPYRGGTLSD ACLRGSGFRQ PDGNHVSGAA  540
FKWLAPQGCD HHGITTSVLP QASSPSSVLM FPQTSSKMPG LEYIYGCLDR NESNRHFKVG  600
PTQDMARTDQ TLRLWPHLIS GKVLDECTRN EKLHSPVGGA EHESNNKCLN TNGCKIFGIS  660
LTDKAQAGDE VDCGNASYHS RFQSLKPQMP KSLGSSCATV HEQRPVVGRV VDISAVNTMI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-1113538518361Auxin response factor 1
4ldy_B1e-1113538518361Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00021PBMTransfer from AT2G33860Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0712910.0AB071291.1 Oryza sativa OsETTIN2 mRNA for Arabidopsis ETTIN-like protein 2, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647511.10.0auxin response factor 2 isoform X2
SwissprotQ0JKI90.0ARFB_ORYSJ; Auxin response factor 2
TrEMBLA0A0E0JM840.0A0A0E0JM84_ORYPU; Auxin response factor
STRINGOPUNC01G25930.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25373580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-167ARF family protein
Publications ? help Back to Top
  1. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]