PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC01G25990.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HB-other

Protein Properties

Length: 1847aa MW: 206385 Da PI: 5.4284

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC01G25990.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.5	2e-17	27	81	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR +++qle+Le+ ++ ++yps++ r+eL++k+gL++rq ++WF+ rR k++k OPUNC01G25990.1 27 KRMMKSPYQLEVLEKTYAVEQYPSETLRAELSAKIGLSDRQLQMWFCHRRLKDRK 81 688999***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-16	11	81	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.84E-16	16	81	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.904	22	82	IPR001356	Homeobox domain
SMART	SM00389	2.4E-15	24	86	IPR001356	Homeobox domain
CDD	cd00086	1.71E-13	27	82	No hit	No description
Pfam	PF00046	3.5E-15	27	81	IPR001356	Homeobox domain
PROSITE profile	PS50827	15.029	608	667	IPR018501	DDT domain
SMART	SM00571	9.6E-16	608	667	IPR018501	DDT domain
Pfam	PF02791	1.5E-15	610	664	IPR018501	DDT domain
Pfam	PF05066	3.0E-15	784	851	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	4.0E-9	1007	1049	IPR028942	WHIM1 domain
Pfam	PF15613	3.8E-12	1185	1257	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1847 aa Download sequence Send to blast
MDDGDGAAPA EGSAXTGASG SGEKTVKRMM KSPYQLEVLE KTYAVEQYPS ETLRAELSAK 60 IGLSDRQLQM WFCHRRLKDR KPPSKRQRRE EEAAAVPLMA PPPVLPPPAL PLSSGELLIG 120 ASSPYDEPPL PPVHSRRGAG RSSAVPRLSA PDIGRRYYEP VPVMLPPPVA SMQLTPSELR 180 VIHSVESQLG EPLREDGPVL GIDFDPLPPG SFGAPIVPEQ QKQHVRSYDT KIYSRHDSKL 240 LKASAFFPSV EHPFVPNSIA GKRKSMVGNL PPVHPHAGSR AVHEYQFLPE QPTNRYEGAS 300 RSHEGASRSH YYDTPVEASN SRMSSHTPGS HLLHGSDDAA PGYAFQGQIS GSGHLPQSGR 360 PEVLPAVPTD YEMIQSNSDL NSVPVEGQYG ISQVAGFENS LLPSERRAYH DEDGSRVDRK 420 RKHNEEAKIA KEVEAHERRI RKELEKQDMM KRKREEQMRK EMERHDRERR KEEERLLRER 480 QREQERFLRE QRREHERMEK FMQKQSRRAE KQRQKEELRK EKEAARQKAA NERATARRIA 540 REYMELVEDE RLELMELAAQ SKGLPSMLSL DSDTLQQLDS FRGMLIPFPP ELVGLKVPFS 600 IKPWTVTEDN VGNLLMVWKF SITFADVLGL SSVTLDEFVQ SLHDYDSRLL GELHIALLKS 660 IIKDIEDVSR TPSVALAVNP AGGHPQIVEG AYAWGFNIRS WQRHLNVLTW PEILRQFALS 720 AGFGPQLKKR NAEDVYYRDD NEGHDGQDVI STLRNGSAAV NAAALMKERG YTHRRRSRHR 780 LTPGTVKFAA FHVLSLEGSK GLTILEVAER IQKSGLRDLT TSKTPEASIA AALSRDTKLF 840 ERTAPSTYCV KFPYRKDPAD SEVVLSSARE KIRAFQNVLS DSEAEKEADD AERDEDSECD 900 DADDDPDGDD VNIDVGDGKD PLIGVKEQDG VPITIIVDNT KREEEKVDAL TQSSDLTTSG 960 KEAPKPSLDK PSSANTSSDS PVGASSDYHE VARTDAEDKE IDESNQGESW VQGLAEGDYC 1020 DLSVEERLNA LVALVGVANE GNYIRAVLEE RLESANALKK QMLAEAQLDK RRSKEEFAGR 1080 VQYNSNMNLK ADVNQENATE STPTPFRNVD KDNDGNAGVV NNNNNEIIDH NSNAANTSYE 1140 RNGLGQDITA TPDTLSVQQY GYADKTRSQL RAYIGHRAEQ LFVYRSLPLG QDRRRNRYWQ 1200 FSTSASPNDP GSGRIFFECR DGYWRVLDTE EAFDSLVASL DTRGSREAQL HSMLQRIEPT 1260 FKEAIKRKKS AVVEQSAGRS LKNGATEMIR ASYRSDFGSP SSNLSGITSD SATAYSDSFK 1320 IELGRNDVEK TAISKRADVF IRWMWRECND CKLTCAMEYG KKRCSELMHS CNCCYQIYLA 1380 EERHCNSCHK NFKSIHNFSD HASQCEDKRR TDHNWKMQTA DHSVPIGVRL LKLQLSTIEA 1440 SIPPEAIQPF WTDGYRKSWG VKLHSTTSLE EIFQMLTLLE GAIKRDHLSS EYETTSELLN 1500 LNTQDNPSQN HVGLSGSAAV LPWVPDTTAA IALRMLDLDS AVSYIQNQKM ERDGGDFMKP 1560 PSRFAAVKNA QELEPLETTG FDHFDGRWVT GSGRRGRGRG SRGGSRGGRG RSRGGRVPRG 1620 INSSSRIGFK DENEASRKNT RRGRSRGRGR GRGRRTVRSR QPSEGRGRSI PKENLLGSFS 1680 MLSNAKPATV EESPRSSGAD EWGLENRRPY IEGDENSSGS HLDQSEDNEE NGQPMGEEYD 1740 EQVPDYSRGY SGGSRPHGMI DDDESEEEDE DVEGDDDGEE DDADRAVDDV DAEMDEDDDI 1800 GDDGGNGVEA NADEDEGGTG LLGIRLEKPT DTRIMRSHVM EEGFACK

Sequence ? help Back to Top

Protein Sequence Length: 1847 aa Download sequence Send to blast

MDDGDGAAPA EGSAXTGASG SGEKTVKRMM KSPYQLEVLE KTYAVEQYPS ETLRAELSAK  60
IGLSDRQLQM WFCHRRLKDR KPPSKRQRRE EEAAAVPLMA PPPVLPPPAL PLSSGELLIG  120
ASSPYDEPPL PPVHSRRGAG RSSAVPRLSA PDIGRRYYEP VPVMLPPPVA SMQLTPSELR  180
VIHSVESQLG EPLREDGPVL GIDFDPLPPG SFGAPIVPEQ QKQHVRSYDT KIYSRHDSKL  240
LKASAFFPSV EHPFVPNSIA GKRKSMVGNL PPVHPHAGSR AVHEYQFLPE QPTNRYEGAS  300
RSHEGASRSH YYDTPVEASN SRMSSHTPGS HLLHGSDDAA PGYAFQGQIS GSGHLPQSGR  360
PEVLPAVPTD YEMIQSNSDL NSVPVEGQYG ISQVAGFENS LLPSERRAYH DEDGSRVDRK  420
RKHNEEAKIA KEVEAHERRI RKELEKQDMM KRKREEQMRK EMERHDRERR KEEERLLRER  480
QREQERFLRE QRREHERMEK FMQKQSRRAE KQRQKEELRK EKEAARQKAA NERATARRIA  540
REYMELVEDE RLELMELAAQ SKGLPSMLSL DSDTLQQLDS FRGMLIPFPP ELVGLKVPFS  600
IKPWTVTEDN VGNLLMVWKF SITFADVLGL SSVTLDEFVQ SLHDYDSRLL GELHIALLKS  660
IIKDIEDVSR TPSVALAVNP AGGHPQIVEG AYAWGFNIRS WQRHLNVLTW PEILRQFALS  720
AGFGPQLKKR NAEDVYYRDD NEGHDGQDVI STLRNGSAAV NAAALMKERG YTHRRRSRHR  780
LTPGTVKFAA FHVLSLEGSK GLTILEVAER IQKSGLRDLT TSKTPEASIA AALSRDTKLF  840
ERTAPSTYCV KFPYRKDPAD SEVVLSSARE KIRAFQNVLS DSEAEKEADD AERDEDSECD  900
DADDDPDGDD VNIDVGDGKD PLIGVKEQDG VPITIIVDNT KREEEKVDAL TQSSDLTTSG  960
KEAPKPSLDK PSSANTSSDS PVGASSDYHE VARTDAEDKE IDESNQGESW VQGLAEGDYC  1020
DLSVEERLNA LVALVGVANE GNYIRAVLEE RLESANALKK QMLAEAQLDK RRSKEEFAGR  1080
VQYNSNMNLK ADVNQENATE STPTPFRNVD KDNDGNAGVV NNNNNEIIDH NSNAANTSYE  1140
RNGLGQDITA TPDTLSVQQY GYADKTRSQL RAYIGHRAEQ LFVYRSLPLG QDRRRNRYWQ  1200
FSTSASPNDP GSGRIFFECR DGYWRVLDTE EAFDSLVASL DTRGSREAQL HSMLQRIEPT  1260
FKEAIKRKKS AVVEQSAGRS LKNGATEMIR ASYRSDFGSP SSNLSGITSD SATAYSDSFK  1320
IELGRNDVEK TAISKRADVF IRWMWRECND CKLTCAMEYG KKRCSELMHS CNCCYQIYLA  1380
EERHCNSCHK NFKSIHNFSD HASQCEDKRR TDHNWKMQTA DHSVPIGVRL LKLQLSTIEA  1440
SIPPEAIQPF WTDGYRKSWG VKLHSTTSLE EIFQMLTLLE GAIKRDHLSS EYETTSELLN  1500
LNTQDNPSQN HVGLSGSAAV LPWVPDTTAA IALRMLDLDS AVSYIQNQKM ERDGGDFMKP  1560
PSRFAAVKNA QELEPLETTG FDHFDGRWVT GSGRRGRGRG SRGGSRGGRG RSRGGRVPRG  1620
INSSSRIGFK DENEASRKNT RRGRSRGRGR GRGRRTVRSR QPSEGRGRSI PKENLLGSFS  1680
MLSNAKPATV EESPRSSGAD EWGLENRRPY IEGDENSSGS HLDQSEDNEE NGQPMGEEYD  1740
EQVPDYSRGY SGGSRPHGMI DDDESEEEDE DVEGDDDGEE DDADRAVDDV DAEMDEDDDI  1800
GDDGGNGVEA NADEDEGGTG LLGIRLEKPT DTRIMRSHVM EEGFACK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1643	1653	RSRGRGRGRGR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107129	0.0	AK107129.1 Oryza sativa Japonica Group cDNA clone:002-124-C03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616412.1	0.0	homeobox-DDT domain protein RLT2 isoform X1
TrEMBL	A0A0E0JM90	0.0	A0A0E0JM90_ORYPU; Uncharacterized protein
STRING	OPUNC01G25990.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2283	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator