PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC01G25990.2

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HB-other

Protein Properties

Length: 1803aa MW: 201425 Da PI: 5.3414

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC01G25990.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.6	1.9e-17	27	81	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR +++qle+Le+ ++ ++yps++ r+eL++k+gL++rq ++WF+ rR k++k OPUNC01G25990.2 27 KRMMKSPYQLEVLEKTYAVEQYPSETLRAELSAKIGLSDRQLQMWFCHRRLKDRK 81 688999***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-16	11	81	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.41E-16	16	81	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.904	22	82	IPR001356	Homeobox domain
SMART	SM00389	2.4E-15	24	86	IPR001356	Homeobox domain
CDD	cd00086	1.81E-13	27	82	No hit	No description
Pfam	PF00046	3.4E-15	27	81	IPR001356	Homeobox domain
PROSITE profile	PS50827	15.029	564	623	IPR018501	DDT domain
SMART	SM00571	9.6E-16	564	623	IPR018501	DDT domain
Pfam	PF02791	1.4E-15	566	620	IPR018501	DDT domain
Pfam	PF05066	2.9E-15	740	807	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	3.9E-9	963	1005	IPR028942	WHIM1 domain
Pfam	PF15613	3.6E-12	1141	1213	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1803 aa Download sequence Send to blast
MDDGDGAAPA EGSAXTGASG SGEKTVKRMM KSPYQLEVLE KTYAVEQYPS ETLRAELSAK 60 IGLSDRQLQM WFCHRRLKDR KPPSKRQRRE EEAAAVPLMA PPPVLPPPAL PLSSGELLIG 120 ASSPYDEPPL PPVHSRRGAG RSSAVPRLSA PDIGRRYYEP VPVMLPPPVA SMQLTPSELR 180 VIHSVESQLG EPLREDGPAS AFFPSVEHPF VPNSIAGKRK SMVGNLPPVH PHAGSRAVHE 240 YQFLPEQPTN RYEGASRSHE GASRSHYYDT PVEASNSRMS SHTPGSHLLH GSDDAAPGYA 300 FQGQISGSGH LPQSGRPEVL PAVPTDYEMI QSNSDLNSVP VEGQYGISQV AGFENSLLPS 360 ERRAYHDEDG SRVDRKRKHN EEAKIAKEVE AHERRIRKEL EKQDMMKRKR EEQMRKEMER 420 HDRERRKEEE RLLRERQREQ ERFLREQRRE HERMEKFMQK QSRRAEKQRQ KEELRKEKEA 480 ARQKAANERA TARRIAREYM ELVEDERLEL MELAAQSKGL PSMLSLDSDT LQQLDSFRGM 540 LIPFPPELVG LKVPFSIKPW TVTEDNVGNL LMVWKFSITF ADVLGLSSVT LDEFVQSLHD 600 YDSRLLGELH IALLKSIIKD IEDVSRTPSV ALAVNPAGGH PQIVEGAYAW GFNIRSWQRH 660 LNVLTWPEIL RQFALSAGFG PQLKKRNAED VYYRDDNEGH DGQDVISTLR NGSAAVNAAA 720 LMKERGYTHR RRSRHRLTPG TVKFAAFHVL SLEGSKGLTI LEVAERIQKS GLRDLTTSKT 780 PEASIAAALS RDTKLFERTA PSTYCVKFPY RKDPADSEVV LSSAREKIRA FQNVLSDSEA 840 EKEADDAERD EDSECDDADD DPDGDDVNID VGDGKDPLIG VKEQDGVPIT IIVDNTKREE 900 EKVDALTQSS DLTTSGKEAP KPSLDKPSSA NTSSDSPVGA SSDYHEVART DAEDKEIDES 960 NQGESWVQGL AEGDYCDLSV EERLNALVAL VGVANEGNYI RAVLEERLES ANALKKQMLA 1020 EAQLDKRRSK EEFAGRVQYN SNMNLKADVN QENATESTPT PFRNVDKDND GNAGVVNNNN 1080 NEIIDHNSNA ANTSYERNGL GQDITATPDT LSVQQYGYAD KTRSQLRAYI GHRAEQLFVY 1140 RSLPLGQDRR RNRYWQFSTS ASPNDPGSGR IFFECRDGYW RVLDTEEAFD SLVASLDTRG 1200 SREAQLHSML QRIEPTFKEA IKRKKSAVVE QSAGRSLKNG ATEMIRASYR SDFGSPSSNL 1260 SGITSDSATA YSDSFKIELG RNDVEKTAIS KRADVFIRWM WRECNDCKLT CAMEYGKKRC 1320 SELMHSCNCC YQIYLAEERH CNSCHKNFKS IHNFSDHASQ CEDKRRTDHN WKMQTADHSV 1380 PIGVRLLKLQ LSTIEASIPP EAIQPFWTDG YRKSWGVKLH STTSLEEIFQ MLTLLEGAIK 1440 RDHLSSEYET TSELLNLNTQ DNPSQNHVGL SGSAAVLPWV PDTTAAIALR MLDLDSAVSY 1500 IQNQKMERDG GDFMKPPSRF AAVKNAQELE PLETTGFDHF DGRWVTGSGR RGRGRGSRGG 1560 SRGGRGRSRG GRVPRGINSS SRIGFKDENE ASRKNTRRGR SRGRGRGRGR RTVRSRQPSE 1620 GRGRSIPKEN LLGSFSMLSN AKPATVEESP RSSGADEWGL ENRRPYIEGD ENSSGSHLDQ 1680 SEDNEENGQP MGEEYDEQVP DYSRGYSGGS RPHGMIDDDE SEEEDEDVEG DDDGEEDDAD 1740 RAVDDVDAEM DEDDDIGDDG GNGVEANADE DEGGTGLLGI RLEKPTDTRI MRSHVMEEGF 1800 ACK

Sequence ? help Back to Top

Protein Sequence Length: 1803 aa Download sequence Send to blast

MDDGDGAAPA EGSAXTGASG SGEKTVKRMM KSPYQLEVLE KTYAVEQYPS ETLRAELSAK  60
IGLSDRQLQM WFCHRRLKDR KPPSKRQRRE EEAAAVPLMA PPPVLPPPAL PLSSGELLIG  120
ASSPYDEPPL PPVHSRRGAG RSSAVPRLSA PDIGRRYYEP VPVMLPPPVA SMQLTPSELR  180
VIHSVESQLG EPLREDGPAS AFFPSVEHPF VPNSIAGKRK SMVGNLPPVH PHAGSRAVHE  240
YQFLPEQPTN RYEGASRSHE GASRSHYYDT PVEASNSRMS SHTPGSHLLH GSDDAAPGYA  300
FQGQISGSGH LPQSGRPEVL PAVPTDYEMI QSNSDLNSVP VEGQYGISQV AGFENSLLPS  360
ERRAYHDEDG SRVDRKRKHN EEAKIAKEVE AHERRIRKEL EKQDMMKRKR EEQMRKEMER  420
HDRERRKEEE RLLRERQREQ ERFLREQRRE HERMEKFMQK QSRRAEKQRQ KEELRKEKEA  480
ARQKAANERA TARRIAREYM ELVEDERLEL MELAAQSKGL PSMLSLDSDT LQQLDSFRGM  540
LIPFPPELVG LKVPFSIKPW TVTEDNVGNL LMVWKFSITF ADVLGLSSVT LDEFVQSLHD  600
YDSRLLGELH IALLKSIIKD IEDVSRTPSV ALAVNPAGGH PQIVEGAYAW GFNIRSWQRH  660
LNVLTWPEIL RQFALSAGFG PQLKKRNAED VYYRDDNEGH DGQDVISTLR NGSAAVNAAA  720
LMKERGYTHR RRSRHRLTPG TVKFAAFHVL SLEGSKGLTI LEVAERIQKS GLRDLTTSKT  780
PEASIAAALS RDTKLFERTA PSTYCVKFPY RKDPADSEVV LSSAREKIRA FQNVLSDSEA  840
EKEADDAERD EDSECDDADD DPDGDDVNID VGDGKDPLIG VKEQDGVPIT IIVDNTKREE  900
EKVDALTQSS DLTTSGKEAP KPSLDKPSSA NTSSDSPVGA SSDYHEVART DAEDKEIDES  960
NQGESWVQGL AEGDYCDLSV EERLNALVAL VGVANEGNYI RAVLEERLES ANALKKQMLA  1020
EAQLDKRRSK EEFAGRVQYN SNMNLKADVN QENATESTPT PFRNVDKDND GNAGVVNNNN  1080
NEIIDHNSNA ANTSYERNGL GQDITATPDT LSVQQYGYAD KTRSQLRAYI GHRAEQLFVY  1140
RSLPLGQDRR RNRYWQFSTS ASPNDPGSGR IFFECRDGYW RVLDTEEAFD SLVASLDTRG  1200
SREAQLHSML QRIEPTFKEA IKRKKSAVVE QSAGRSLKNG ATEMIRASYR SDFGSPSSNL  1260
SGITSDSATA YSDSFKIELG RNDVEKTAIS KRADVFIRWM WRECNDCKLT CAMEYGKKRC  1320
SELMHSCNCC YQIYLAEERH CNSCHKNFKS IHNFSDHASQ CEDKRRTDHN WKMQTADHSV  1380
PIGVRLLKLQ LSTIEASIPP EAIQPFWTDG YRKSWGVKLH STTSLEEIFQ MLTLLEGAIK  1440
RDHLSSEYET TSELLNLNTQ DNPSQNHVGL SGSAAVLPWV PDTTAAIALR MLDLDSAVSY  1500
IQNQKMERDG GDFMKPPSRF AAVKNAQELE PLETTGFDHF DGRWVTGSGR RGRGRGSRGG  1560
SRGGRGRSRG GRVPRGINSS SRIGFKDENE ASRKNTRRGR SRGRGRGRGR RTVRSRQPSE  1620
GRGRSIPKEN LLGSFSMLSN AKPATVEESP RSSGADEWGL ENRRPYIEGD ENSSGSHLDQ  1680
SEDNEENGQP MGEEYDEQVP DYSRGYSGGS RPHGMIDDDE SEEEDEDVEG DDDGEEDDAD  1740
RAVDDVDAEM DEDDDIGDDG GNGVEANADE DEGGTGLLGI RLEKPTDTRI MRSHVMEEGF  1800
ACK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1599	1609	RSRGRGRGRGR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107129	0.0	AK107129.1 Oryza sativa Japonica Group cDNA clone:002-124-C03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616412.1	0.0	homeobox-DDT domain protein RLT2 isoform X1
TrEMBL	A0A0E0JM91	0.0	A0A0E0JM91_ORYPU; Uncharacterized protein
STRING	OPUNC01G25990.1	0.0	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator