PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC01G26100.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 118aa MW: 11845 Da PI: 5.8395

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC01G26100.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	37.1	6.5e-12	77	98	5	26
zf-Dof 5 alkcprCdstntkfCyynnysl 26 l+cprC s++tkfCy+nny+ OPUNC01G26100.1 77 PLPCPRCGSRETKFCYFNNYND 98 689*****************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-7	76	97	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.2E-9	77	98	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MANLPSTAAA ADASGFKLFG KVIQPDGQRG VEESAAAQAP PHPPAPPVME AAAGTSQTLQ 60 AAGGGGGGGG GGGGGEPLPC PRCGSRETKF CYFNNYNDSF GGQMDEASNE RDKKRKFG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003223	1e-100	AP003223.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0007F06.
GenBank	AP003264	1e-100	AP003264.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0485G01.
GenBank	AP014957	1e-100	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619286.1	8e-26	dof zinc finger protein 5-like
TrEMBL	A0A0E0JMA4	2e-78	A0A0E0JMA4_ORYPU; Uncharacterized protein
STRING	OPUNC01G26100.1	3e-79	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14716	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G47655.1	8e-09	Dof family protein