PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G26430.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 261aa    MW: 29337.7 Da    PI: 10.5556
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G26430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP70.32.3e-2264140371
          E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse...........dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      +++Lr +++    + +k+e+ g++t+neva+e+ +e           d+kn+rRR+YD++NVL a+++i+k +k+ei+w+g
  OPUNC01G26430.1  64 GWGLREFSKI---VSKKVEAkGRTTYNEVADEIFAElksithnglefDEKNIRRRVYDAFNVLIAIRVIAK-DKKEIKWMG 140
                      689*******...99999999**************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094041.2E-9124258IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.101.1E-3560145IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.9E-2462140IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.14E-1665141IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023196.1E-1865140IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144583.03E-28145247IPR014889Transcription factor DP, C-terminal
SMARTSM011383.3E-25147257IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440743.66E-31147250No hitNo description
PfamPF087817.0E-23148248IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MAPPCGDAAA AASAAPGLAN LLIREGAGLP PRPERGGGNA AERKESGANR NGKKEKAGAQ  60
RITGWGLREF SKIVSKKVEA KGRTTYNEVA DEIFAELKSI THNGLEFDEK NIRRRVYDAF  120
NVLIAIRVIA KDKKEIKWMG LTNYRYEKIQ KLEEVHKELI TRIKNKKKLL QEIEKQFDDL  180
QNIKLRNQAS QRPAESVNGI RLPFLLIKTS RKARVEIEIS EDSKFARFDF NGAPFTMHDD  240
VSILEAIRRN NKGRAGLSML P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-2364141989PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2245290.0AY224529.1 Oryza sativa (japonica cultivar-group) isolate 21044 DP protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631692.11e-172transcription factor-like protein DPB isoform X2
TrEMBLA0A0E0JME70.0A0A0E0JME7_ORYPU; Uncharacterized protein
STRINGOPUNC01G26430.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-56Transcription factor DP