PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G28050.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 390aa    MW: 40261.7 Da    PI: 7.2753
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G28050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.32e-06288328954
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r RR+r+ +++  L++l+P        K++ a++L +A  Y+k L
  OPUNC01G28050.1 288 ARLRRERVSDRLRVLQKLVPGG-----SKMDTASMLDEAASYLKFL 328
                      599*****************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.27E-10270333No hitNo description
PROSITE profilePS5088814.411279328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-13285338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-12285334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-10288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
METFGWAGGG QLMHHDDGYL PRSVGCGRFE LDDAFLGACF GAQLQCDVGG GDDGGCLQGA  60
SGFGAAGDPL GFLCSGDVFA SVAEGAGGAH DDGLLDAALA FSRKLGAAFD GSDGAAVSNG  120
AMLSSYSGTT GGNISSGESN NYSGGGCYDA EVVSPTSTMS PATPSSLPQP PLHPKRKLYD  180
HHHPAIAAAA AAAPPLAPCP RPNTGAVAAK RKASTSATSI TFGHQPHHHH HGATTAGYEP  240
DMEAMAQVKE MIYRAAAMRP VHLGTEAAAD KPRRKNVRIS SDPQTVAARL RRERVSDRLR  300
VLQKLVPGGS KMDTASMLDE AASYLKFLKS QVQKLETLGT TTTTSKLPQH YYSGNSSSSS  360
NHHGFLGFAA NNNAISGYAN SNVGNATKLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269275DKPRRKN
2270275KPRRKN
3288293RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1002080.0AK100208.1 Oryza sativa Japonica Group cDNA clone:J023042H10, full insert sequence.
GenBankAK1061190.0AK106119.1 Oryza sativa Japonica Group cDNA clone:001-207-E08, full insert sequence.
GenBankAP0032730.0AP003273.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0510F09.
GenBankAP0033810.0AP003381.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0692C11.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629328.10.0transcription factor LATE FLOWERING-like
RefseqXP_015629344.10.0transcription factor LATE FLOWERING-like
TrEMBLA0A0E0JN160.0A0A0E0JN16_ORYPU; Uncharacterized protein
STRINGOPUNC01G28050.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.11e-34bHLH family protein