PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G30360.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 428aa    MW: 45450.8 Da    PI: 6.8024
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G30360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.82e-34109217189
              TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....ssssasec.eaesssssasnsssg. 88 
                      aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+++ak+ai+el++     ++++a+++ +  +  ++a     + 
  OPUNC01G30360.1 109 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLMRNAKAAIDELPDRaeapPQPAATSTeQ-PEATEQAT----St 197
                      689**************************************************************65543333322221.11111111....11 PP

              TCP  89 ...................k 89 
                                         +
  OPUNC01G30360.1 198 sygfgnsggamtsaasaagS 217
                      22344444555544444430 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-31111231IPR005333Transcription factor, TCP
PROSITE profilePS5136932.971112170IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MEIRELKLEE DKNQLSKGLD PWTSNPTASA STLHYLLQEK ERAQQAHEQF QIYQQQQGFG  60
SFLQHRIRQP ASRGPGGAAG GDGGGSSGES TPVDALATAF GAGRIVRSAA GRKDRHSKVC  120
TARGLRDRRV RLAAHTAIRF YDVQDRLGYD RPSKAVDWLM RNAKAAIDEL PDRAEAPPQP  180
AATSTEQPEA TEQATSTSYG FGNSGGAMTS AASAAGSFLP HSLGGADRVS DNVKSLFPSS  240
STASGAASAG HDEYRGSPPD LLSRTTSNQQ PQELCLTLQS NQHQIFSHVS SNHHGMISSA  300
GVPGWPDHSQ RMQAWHAPEN STGDGRGGGN GDGYMFAMPS RQGLDQSQLF SHGEPLQSSG  360
SGWASARTWL DPLAVAAIHH QPSTMAAGQV GFGHLVGGSG GGFMGFLAPA AQRLEGEEEH  420
GSEMMRRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-20117171155Putative transcription factor PCF6
5zkt_B4e-20117171155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0718070.0AB071807.1 Oryza sativa Japonica Group mRNA for transcription factor PCF7, partial cds.
GenBankAP0032680.0AP003268.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0503C12.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639296.10.0transcription factor PCF7
SwissprotQ8LT050.0PCF7_ORYSJ; Transcription factor PCF7
TrEMBLA0A0E0JNU80.0A0A0E0JNU8_ORYPU; Uncharacterized protein
STRINGOPUNC01G30360.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120562330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.35e-40TCP family protein